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Change foaf:depicted_by to foaf:depiction (#2184)
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* change `foaf:depicted_by` to `foaf:depiction`

* remove `foaf:depicted_by` from the accepted annotations

---------

Co-authored-by: Anita Caron <[email protected]>
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Anita Caron and anitacaron authored Oct 17, 2023
1 parent c99256a commit 16da5ea
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Showing 2 changed files with 8 additions and 8 deletions.
14 changes: 7 additions & 7 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3618,7 +3618,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000025 "MESH:D010063")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000025 "mature oocyte")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000025 "ovum")
AnnotationAssertion(rdfs:label obo:CL_0000025 "egg cell")
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depicted_by> obo:CL_0000025 "https://www.swissbiopics.org/api/image/Egg_cell.svg"^^xsd:anyURI)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depiction> obo:CL_0000025 "https://www.swissbiopics.org/api/image/Egg_cell.svg"^^xsd:anyURI)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000025 obo:CL_0000675)
SubClassOf(obo:CL_0000025 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0007143))
SubClassOf(obo:CL_0000025 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000023))
Expand Down Expand Up @@ -4075,7 +4075,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "FMA:66768")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "WBbt:0003672")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000066 "epitheliocyte")
AnnotationAssertion(rdfs:label obo:CL_0000066 "epithelial cell")
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depicted_by> obo:CL_0000066 "https://www.swissbiopics.org/api/image/Epithelial_cells.svg"^^xsd:anyURI)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depiction> obo:CL_0000066 "https://www.swissbiopics.org/api/image/Epithelial_cells.svg"^^xsd:anyURI)
SubClassOf(obo:CL_0000066 obo:CL_0000000)
SubClassOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000483))
DisjointClasses(obo:CL_0000066 obo:CL_0000738)
Expand Down Expand Up @@ -5221,7 +5221,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000187 "WBbt:0003675")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000187 "muscle fiber")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000187 "myocyte")
AnnotationAssertion(rdfs:label obo:CL_0000187 "muscle cell")
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depicted_by> obo:CL_0000187 "https://www.swissbiopics.org/api/image/Muscle_cells.svg"^^xsd:anyURI)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depiction> obo:CL_0000187 "https://www.swissbiopics.org/api/image/Muscle_cells.svg"^^xsd:anyURI)
SubClassOf(obo:CL_0000187 obo:CL_0000183)
SubClassOf(obo:CL_0000187 obo:CL_0000393)
SubClassOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000056))
Expand Down Expand Up @@ -5403,7 +5403,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000210 "BTO:0001060")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000210 "CALOHA:TS-0868")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000210 "FMA:86740")
AnnotationAssertion(rdfs:label obo:CL_0000210 "photoreceptor cell")
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depicted_by> obo:CL_0000210 "https://www.swissbiopics.org/api/image/Photoreceptor_cell.svg"^^xsd:anyURI)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depiction> obo:CL_0000210 "https://www.swissbiopics.org/api/image/Photoreceptor_cell.svg"^^xsd:anyURI)
EquivalentClasses(obo:CL_0000210 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050962)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000210 obo:CL_0000006)

Expand Down Expand Up @@ -7878,7 +7878,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000540 "WBbt:0003679")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000540 "nerve cell")
AnnotationAssertion(rdfs:comment obo:CL_0000540 "These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.")
AnnotationAssertion(rdfs:label obo:CL_0000540 "neuron")
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depicted_by> obo:CL_0000540 "https://www.swissbiopics.org/api/image/Neuron_cells.svg"^^xsd:anyURI)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depiction> obo:CL_0000540 "https://www.swissbiopics.org/api/image/Neuron_cells.svg"^^xsd:anyURI)
SubClassOf(obo:CL_0000540 obo:CL_0000393)
SubClassOf(obo:CL_0000540 obo:CL_0000404)
SubClassOf(obo:CL_0000540 obo:CL_0002319)
Expand Down Expand Up @@ -7982,7 +7982,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000548 <http://purl.obolibrary.org
AnnotationAssertion(rdfs:comment obo:CL_0000548 "https://github.com/obophenotype/cell-ontology/issues/2124")
AnnotationAssertion(rdfs:label obo:CL_0000548 "obsolete animal cell")
AnnotationAssertion(owl:deprecated obo:CL_0000548 "true"^^xsd:boolean)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depicted_by> obo:CL_0000548 "https://www.swissbiopics.org/api/image/Animal_cells.svg"^^xsd:anyURI)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depiction> obo:CL_0000548 "https://www.swissbiopics.org/api/image/Animal_cells.svg"^^xsd:anyURI)

# Class: obo:CL_0000549 (basophilic erythroblast)

Expand Down Expand Up @@ -22555,7 +22555,7 @@ AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0008049 <https
AnnotationAssertion(oboInOwl:creation_date obo:CL_0008049 "2020-09-28T09:52:58Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0008049 "pyramidal cell of Betz")
AnnotationAssertion(rdfs:label obo:CL_0008049 "Betz cell"@en)
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depicted_by> obo:CL_0008049 "https://en.wikipedia.org/w/index.php?title=Betz_cell&oldid=977472330#/media/File:GolgiStainedPyramidalCell.jpg")
AnnotationAssertion(<http://xmlns.com/foaf/0.1/depiction> obo:CL_0008049 "https://en.wikipedia.org/w/index.php?title=Betz_cell&oldid=977472330#/media/File:GolgiStainedPyramidalCell.jpg")
SubClassOf(obo:CL_0008049 obo:CL_4023041)
SubClassOf(obo:CL_0008049 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070017))
SubClassOf(obo:CL_0008049 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0022315))
Expand Down
2 changes: 1 addition & 1 deletion src/sparql/illegal-annotation-property-violation.sparql
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Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@ SELECT DISTINCT ?term ?annotation WHERE {
<http://www.w3.org/2004/02/skos/core#narrowMatch>,
<http://www.w3.org/2004/02/skos/core#relatedMatch>,
<http://www.w3.org/2002/07/owl#deprecated>,
<http://xmlns.com/foaf/0.1/depicted_by>
<http://xmlns.com/foaf/0.1/depiction>
))
FILTER (isIRI(?term) && STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/CL_"))
}

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