Merge pull request #781 from obophenotype/release-2020-10-19

Release 2020-10-19
obophenotype · Oct 19, 2020 · 410f8d5 · 410f8d5
2 parents 95249fc + c2c811f
commit 410f8d5
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Showing 36 changed files with 10,596 additions and 11,842 deletions.
diff --git a/cl-base.json b/cl-base.json
diff --git a/cl-base.obo b/cl-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: cl/releases/2020-10-02/cl-base.owl
+data-version: cl/releases/2020-10-19/cl-base.owl
 subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
 synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
 synonymtypedef: LATIN "latin term"
@@ -19,7 +19,7 @@ property_value: http://purl.org/dc/elements/1.1/description "An ontology of cell
 property_value: http://purl.org/dc/elements/1.1/title "Cell Ontology" xsd:string
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/
-property_value: owl:versionInfo "2020-10-02" xsd:string
+property_value: owl:versionInfo "2020-10-19" xsd:string
 
 [Term]
 id: CL:0000000
@@ -5178,7 +5178,7 @@ xref: WBbt:0003679
 is_a: CL:0000393 ! electrically responsive cell
 is_a: CL:0000404 ! electrically signaling cell
 is_a: CL:0002319 ! neural cell
-relationship: RO:0002202 CL:0000031 ! neuroblast (sensu Vertebrata)
+relationship: RO:0002202 CL:0000031 {gci_filler="NCBITaxon:7742", gci_relation="RO:0002162", xref="https://github.com/obophenotype/cell-ontology/issues/757"} ! neuroblast (sensu Vertebrata)
 relationship: RO:0002215 GO:0019226
 
 [Term]
@@ -21056,7 +21056,7 @@ relationship: RO:0002120 CL:0011102 ! parasympathetic neuron
 [Term]
 id: CL:0005026
 name: hepatoblast
-def: "Multi fate stem cell that gives rise to to both hepatocytes and cholangiocytes as descendants." [GOC:CVS, PMID:18356246, PMID:20483998]
+def: "Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants." [GOC:CVS, PMID:18356246, PMID:20483998]
 is_a: CL:0000048 ! multi fate stem cell
 
 [Term]

diff --git a/cl-base.owl b/cl-base.owl
@@ -13,7 +13,7 @@
      xmlns:ubprop="http://purl.obolibrary.org/obo/ubprop#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cl/cl-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cl/releases/2020-10-02/cl-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cl/releases/2020-10-19/cl-base.owl"/>
         <dc:contributor>Alexander Diehl</dc:contributor>
         <dc:contributor>Ceri van Slyke</dc:contributor>
         <dc:contributor>Chris Mungall</dc:contributor>
@@ -28,7 +28,7 @@
         <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2020-10-02</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2020-10-19</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -3840,7 +3840,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:add</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dsd</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MESH:A11.329.427</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MESH:D008407</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMCID:PMC1312421</oboInOwl:hasDbXref>
@@ -3867,7 +3867,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000097"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tissue basophil</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -4735,7 +4735,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ectoderm destined to be nervous tissue.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -11849,7 +11849,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -13524,12 +13524,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000393"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000404"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0002319"/>
-        <rdfs:subClassOf>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000031"/>
-            </owl:Restriction>
-        </rdfs:subClassOf>
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002215"/>
@@ -40664,7 +40658,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A chromaffin cell of the adrenal medulla that produces norepinephrine.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -40943,7 +40937,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">One of two small cells formed by the first and second meiotic division of oocytes.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://en.wikipedia.org/wiki/Polar_body</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -40970,7 +40964,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A small cell formed by the first meiotic division of oocytes.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0002091"/>
@@ -41048,7 +41042,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A small cell formed by the second meiotic division of oocytes. In mammals, the second polar body may fail to form unless the ovum has been penetrated by a sperm cell.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0002093"/>
@@ -41103,7 +41097,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cell in the hilum of the ovary that produces androgens.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -43218,7 +43212,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The dead keratin-filled squamous cell of the stratum corneum. This cell type lacks a nucleus.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -45824,7 +45818,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBSOLETE: A lymphocyte that lacks T or B cell surface markers.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -47933,7 +47927,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A stem cell of embryonic origin.</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dsd</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:18179856</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -53807,7 +53801,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A melanocyte located between the epithelial marginal cell layer and the mesodermal basal cell layer within the intrastrial space; the predominant cellular component of the electrogenic machinery that generates an endocochlear potential (80-100 mV) .</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MP:0000048</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MP:0000048</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -60791,13 +60785,13 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0005026">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000048"/>
-        <obo:IAO_0000115>Multi fate stem cell that gives rise to to both hepatocytes and cholangiocytes as descendants.</obo:IAO_0000115>
+        <obo:IAO_0000115>Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants.</obo:IAO_0000115>
         <rdfs:label xml:lang="en">hepatoblast</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0005026"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget>Multi fate stem cell that gives rise to to both hepatocytes and cholangiocytes as descendants.</owl:annotatedTarget>
+        <owl:annotatedTarget>Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:CVS</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:18356246</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:20483998</oboInOwl:hasDbXref>
@@ -86270,6 +86264,33 @@ plexiform layer using GABA.</owl:annotatedTarget>
     ///////////////////////////////////////////////////////////////////////////////////////
      -->
 
+    <owl:Axiom>
+        <owl:annotatedSource>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000540"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002162"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+                <rdfs:subClassOf>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000031"/>
+                    </owl:Restriction>
+                </rdfs:subClassOf>
+            </owl:Class>
+        </owl:annotatedSource>
+        <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+        <owl:annotatedTarget>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000031"/>
+            </owl:Restriction>
+        </owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:resource="https://github.com/obophenotype/cell-ontology/issues/757"/>
+    </owl:Axiom>
     <owl:Restriction>
         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002162"/>
         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>