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shawntanzk committed Nov 25, 2021
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10 changes: 5 additions & 5 deletions cl-full.json
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Expand Up @@ -19536,6 +19536,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_0002639"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0002324",
"pred": "http://purl.obolibrary.org/obo/BFO_0000051",
"sub": "http://purl.obolibrary.org/obo/UBERON_0006954"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0002324",
"pred": "is_a",
Expand Down Expand Up @@ -23371,11 +23376,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_1001592"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_1000416",
"pred": "http://purl.obolibrary.org/obo/BFO_0000051",
"sub": "http://purl.obolibrary.org/obo/UBERON_0006954"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_1000425",
"pred": "is_a",
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30 changes: 15 additions & 15 deletions cl-full.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -62120,8 +62120,8 @@ id: NCBITaxon:4751
name: Fungi
namespace: ncbi_taxonomy
synonym: "fungal-" RELATED PRO-short-label [PRO:DAN]
synonym: "fungi" RELATED in_part []
synonym: "fungi" RELATED blast_name []
synonym: "fungi" RELATED in_part []
synonym: "Mycota" RELATED genbank_synonym []
xref: GC_ID:1
xref: PMID:11062127
Expand Down Expand Up @@ -85453,8 +85453,8 @@ relationship: part_of UBERON:0009778 {source="https://github.com/obophenotype/ub
relationship: part_of UBERON:0009778 {source="https://github.com/obophenotype/uberon/issues/86"} ! pleural sac
relationship: present_in_taxon NCBITaxon:8782 {source="BGEE:AN", source="ISBN:978-0030223693"}
property_value: depicted_by http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png xsd:anyURI
property_value: UBPROP:0000001 "The serous membrane that covers the lungs and lines the pleural cavity. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.264][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000394", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:0124020607"}
property_value: UBPROP:0000001 "The serous membrane that covers the lungs and lines the pleural cavity. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.264][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000394", ontology="VHOG", source="ISBN:0124020607", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000001 "The serous membrane that covers the lungs and lines the pleural cavity. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.264][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000394", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:0124020607"}
property_value: UBPROP:0000007 "pleural" xsd:string
property_value: UBPROP:0000012 "In MA, is_a cavity lining (which we equate to parietal). In FMA, is_a (viscous) serous membrane (which includes mesothelium plus connective tissue). Note the MA structure should probably be associated with the mesothelium of pleura in FMA. JB/EHDAA2 argues the term 'pleura' is best used for the mesothelial lining (thus excluding connective tissue). See https://github.com/obophenotype/uberon/issues/86" xsd:string

Expand Down Expand Up @@ -104074,8 +104074,8 @@ intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery
property_value: UBPROP:0000001 "The endothelium is the thin layer of cells that lines the interior surface of blood vessels, forming an interface between circulating blood in the lumen and the rest of the vessel wall.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011013", ontology="AAO", source="XAO:curator"}
property_value: UBPROP:0000003 "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001215", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207"}
property_value: UBPROP:0000003 "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001215", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001215", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207"}

[Term]
id: UBERON:0001918
Expand Down Expand Up @@ -110674,8 +110674,8 @@ xref: EV:0100173
xref: FMA:77624
xref: GAID:633
xref: HBA:9303
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279
xref: http://linkedlifedata.com/resource/umls/id/C0028936
xref: http://www.snomedbrowser.com/Codes/Details/279394006
xref: MA:0000194
Expand Down Expand Up @@ -145205,8 +145205,8 @@ def: "An acellular membrane that is part of the epithelium, lies adjacent to the
def: "An acellular membrane that is part of the epithelium, lies adjacent to the epithelial cells, and is the fusion of the the basal lamina and the reticular lamina." [http://en.wikipedia.org/wiki/Basement_membrane, http://orcid.org/0000-0002-6601-2165]
synonym: "basement membrane" RELATED [FMA:63872]
synonym: "basement membrane of connective tissue" EXACT [FMA:63872]
synonym: "membrana basalis" EXACT LATIN [http://en.wikipedia.org/wiki/Basement_membrane]
synonym: "membrana basalis" EXACT LATIN [Wikipedia:Basement_membrane]
synonym: "membrana basalis" EXACT LATIN [http://en.wikipedia.org/wiki/Basement_membrane]
xref: AAO:0010596
xref: Basement:membrane
xref: FMA:63872
Expand Down Expand Up @@ -146575,8 +146575,8 @@ subset: pheno_slim
synonym: "adnexae cutis" RELATED LATIN [Wikipedia:Skin_appendage]
synonym: "adnexae cutis" RELATED LATIN [http://en.wikipedia.org/wiki/Skin_appendage]
synonym: "body hair or bristle" NARROW [GO:GO]
synonym: "skin adnexa" RELATED [Wikipedia:Skin_appendage]
synonym: "skin adnexa" RELATED [http://en.wikipedia.org/wiki/Skin_appendage]
synonym: "skin adnexa" RELATED [Wikipedia:Skin_appendage]
synonym: "skin adnexal structure" RELATED []
synonym: "skin appendage" RELATED [http://en.wikipedia.org/wiki/Skin_appendage]
synonym: "skin appendage" RELATED [Wikipedia:Skin_appendage]
Expand Down Expand Up @@ -146882,8 +146882,8 @@ xref: BAMS:BG
xref: BAMS:BNC
xref: BIRNLEX:1629
xref: EV:0100182
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 {source="BIRNLEX:1629"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224
xref: http://linkedlifedata.com/resource/umls/id/C0004781
xref: UMLS:C0004781 {source="BIRNLEX:1629"}
is_a: UBERON:0007245 ! nuclear complex of neuraxis
Expand Down Expand Up @@ -147323,8 +147323,8 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho
id: UBERON:0006222
name: future diencephalon
namespace: uberon
def: "The foremost region of the future forebrain that develops into the diencephalon." [UBERON:cjm, Wikipedia:Diencephalon]
def: "The foremost region of the future forebrain that develops into the diencephalon." [http://en.wikipedia.org/wiki/Diencephalon, UBERON:cjm]
def: "The foremost region of the future forebrain that develops into the diencephalon." [UBERON:cjm, Wikipedia:Diencephalon]
subset: efo_slim
subset: emapa_ehdaa2
subset: vertebrate_core
Expand Down Expand Up @@ -150570,7 +150570,7 @@ is_a: UBERON:0000420 ! myoepithelium
is_a: UBERON:0003244 ! epithelium of mammary gland
intersection_of: UBERON:0000420 ! myoepithelium
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: has_part CL:1000416 ! obsolete myoepithelial cell of lactiferous gland
relationship: has_part CL:0002324 ! myoepithelial cell of mammary gland
property_value: UBPROP:0000010 "The cells of this structure are specialized epithelial cells that express smooth muscle-specific contractile and cytoskeletal properties; during lactation, MECs contract in response to oxytocin to generate the contractile force required for milk ejection; MECs are involved in all developmental stages of mammary gland morphogenesis, modulating proliferation and differentiation of luminal cells; they take part in the formation of extracellular matrix, synthesizing its components and secreting proteinases and their inhibitors; in addition, MECs are regarded as natural cancer suppressors: they secrete suppressor proteins limiting cancer growth, invasiveness, and neoangiogenesis; MECs are markedly resistant to malignant transformation and they are able to suppress the transformation of neighboring luminal cells[MP]" xsd:string

[Term]
Expand All @@ -150589,8 +150589,8 @@ relationship: part_of UBERON:0000995 ! uterus
id: UBERON:0006960
name: ovary stroma
namespace: uberon
def: "The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis." [http://en.wikipedia.org/wiki/Stroma_of_ovary]
def: "The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis." [Wikipedia:Stroma_of_ovary]
def: "The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis." [http://en.wikipedia.org/wiki/Stroma_of_ovary]
synonym: "interstitial tissue of ovary" EXACT [FMA:18626]
synonym: "ovarian stroma" EXACT [FMA:18626]
synonym: "ovary stroma" EXACT [MA:0002991]
Expand Down Expand Up @@ -162880,8 +162880,8 @@ synonym: "facial bone" RELATED [MA:0000318]
synonym: "facial skeleton" EXACT [FMA:53673]
synonym: "ossa facialia" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_skeleton]
synonym: "ossa facialia" RELATED LATIN [Wikipedia:Facial_skeleton]
synonym: "ossa faciei" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_skeleton]
synonym: "ossa faciei" RELATED LATIN [Wikipedia:Facial_skeleton]
synonym: "ossa faciei" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_skeleton]
synonym: "viscerocranium" RELATED INCONSISTENT [MA:0000318]
xref: EHDAA2:0002206
xref: EHDAA:8361
Expand Down Expand Up @@ -167200,8 +167200,8 @@ synonym: "cranial conduit" NARROW [FMA:53165]
synonym: "cranial foramen" NARROW []
synonym: "foramen of skull" EXACT [Wikipedia:Foramina_of_the_skull]
synonym: "foramen of skull" EXACT [http://en.wikipedia.org/wiki/Foramina_of_the_skull]
synonym: "foramina of the skull" RELATED PLURAL [Wikipedia:Foramina_of_the_skull]
synonym: "foramina of the skull" RELATED PLURAL [http://en.wikipedia.org/wiki/Foramina_of_the_skull]
synonym: "foramina of the skull" RELATED PLURAL [Wikipedia:Foramina_of_the_skull]
xref: FMA:53165
xref: http://en.wikipedia.org/wiki/Foramina_of_the_skull
xref: http://www.snomedbrowser.com/Codes/Details/276742007
Expand Down Expand Up @@ -180580,7 +180580,7 @@ property_value: IAO:0000118 "actively involved in" xsd:string
property_value: IAO:0000118 "enables part of" xsd:string
property_value: seeAlso Involved:in
holds_over_chain: RO:0002327 part_of
is_a: participates_in ! participates_in
is_a: participates_in ! participates in
is_a: RO:0002431 ! involved in or involved in regulation of
transitive_over: part_of ! part_of

Expand Down Expand Up @@ -182320,7 +182320,7 @@ subset: RO:0002259
xref: RO:0002352
property_value: IAO:0000117 "Chris Mungall" xsd:string
is_a: functionally_related_to ! functionally related to
is_a: participates_in ! participates_in
is_a: participates_in ! participates in

[Typedef]
id: intersects_midsagittal_plane_of
Expand Down Expand Up @@ -182499,7 +182499,7 @@ def: "inverse of has output" []
xref: RO:0002353
is_transitive: false
is_a: functionally_related_to ! functionally related to
is_a: participates_in ! participates_in
is_a: participates_in ! participates in

[Typedef]
id: overlaps
Expand Down
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