Skip to content

Commit

Permalink
Merge pull request #599 from obophenotype/issue-557
Browse files Browse the repository at this point in the history 
Issue 557
  • Loading branch information
@dosumis
dosumis authored Jan 3, 2020
2 parents a8ad3ca + 525b58e commit 9050042
Showing 1 changed file with 17 additions and 12 deletions.
29 changes: 17 additions & 12 deletions src/ontology/cl-edit.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4409,7 +4409,7 @@ EquivalentClasses(obo:CL_0000170 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeV
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "ISBN:0721662544"^^xsd:string) obo:IAO_0000115 obo:CL_0000171 "A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon."^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000171 "BTO:0000990"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000171 "FMA:70585"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000171 "alpha cell of iselt of Langerhans"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000171 "alpha cell of islet of Langerhans"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000171 "pancreatic alpha cell"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000171 "cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0000171 "pancreatic A cell"^^xsd:string)
Expand Down Expand Up @@ -7966,6 +7966,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000583 "Markers: Mouse: F4/80mid, CD11b
AnnotationAssertion(rdfs:label obo:CL_0000583 "alveolar macrophage"^^xsd:string)
EquivalentClasses(obo:CL_0000583 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0002299) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001013) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001807) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001931) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002972) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019882) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#has_low_plasma_membrane_amount> obo:PR_000001012) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> obo:PR_000001206)))
SubClassOf(Annotation(oboInOwl:is_inferred "true"^^xsd:string) obo:CL_0000583 obo:CL_0000864)
SubClassOf(obo:CL_0000583 obo:CL_1001603)

# Class: obo:CL_0000584 (enterocyte)

Expand Down Expand Up @@ -8982,6 +8983,7 @@ SubClassOf(obo:CL_0000690 obo:CL_0000488)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000691 "cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0000691 "stellate interneuron"^^xsd:string)
SubClassOf(obo:CL_0000691 obo:CL_0000099)
SubClassOf(obo:CL_0000691 obo:CL_0000122)

# Class: obo:CL_0000692 (terminal Schwann cell)

Expand Down Expand Up @@ -10278,6 +10280,7 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000815 "suppressor T-cell"^
AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000815 "suppressor T-lymphocyte"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000815 "BTO:0004520"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000815 "FMA:84070"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000815 "Treg")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000815 "regulatory T lymphocyte"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000815 "regulatory T-cell"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000815 "regulatory T-lymphocyte"^^xsd:string)
Expand Down Expand Up @@ -13860,7 +13863,7 @@ SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002049))

# Class: obo:CL_0002051 (CD38-high pre-BCR positive cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:18432934"^^xsd:string) obo:IAO_0000115 obo:CL_0002051 "A pre-BCR positive T cell that is CD38-high."^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:18432934"^^xsd:string) obo:IAO_0000115 obo:CL_0002051 "A pre-BCR positive B cell that is CD38-high."^^xsd:string)
AnnotationAssertion(oboInOwl:created_by obo:CL_0002051 "tmeehan"^^xsd:string)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002051 "2010-04-28T02:27:47Z"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002051 "cell"^^xsd:string)
Expand Down Expand Up @@ -14992,14 +14995,14 @@ SubClassOf(obo:CL_0002142 obo:CL_0000318)
SubClassOf(obo:CL_0002142 obo:CL_0000434)
SubClassOf(obo:CL_0002142 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000423))

# Class: obo:CL_0002143 (dark chief cell of parathyroid cell)
# Class: obo:CL_0002143 (dark chief cell of parathyroid gland)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "ISBN:0721662544"^^xsd:string) obo:IAO_0000115 obo:CL_0002143 "A chief cell that is smaller than light chief cells and has a smaller and darker nucleus and a finely granular cytoplasm with many granules."^^xsd:string)
AnnotationAssertion(oboInOwl:created_by obo:CL_0002143 "tmeehan"^^xsd:string)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002143 "2010-08-24T02:18:36Z"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002143 "FMA:69080"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002143 "cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0002143 "dark chief cell of parathyroid cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0002143 "dark chief cell of parathyroid gland")
SubClassOf(obo:CL_0002143 obo:CL_0000446)

# Class: obo:CL_0002144 (capillary endothelial cell)
Expand Down Expand Up @@ -15039,14 +15042,15 @@ SubClassOf(obo:CL_0002146 obo:CL_0000318)
SubClassOf(obo:CL_0002146 obo:CL_0000434)
SubClassOf(obo:CL_0002146 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000423))

# Class: obo:CL_0002147 (clear chief cell of parathyroid cell)
# Class: obo:CL_0002147 (clear chief cell of parathyroid gland)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "ISBN:0618947256"^^xsd:string) obo:IAO_0000115 obo:CL_0002147 "A chief cell of parathyroid glands that does not stain with hematoxylin or eosin. This cell is larger, has a larger nucleus and fewer secretory granules than dark chief cells."^^xsd:string)
AnnotationAssertion(oboInOwl:created_by obo:CL_0002147 "tmeehan"^^xsd:string)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002147 "2010-08-24T10:39:42Z"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002147 "FMA:69081"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002147 "clear chief cell of parathyroid cell")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002147 "cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0002147 "clear chief cell of parathyroid cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0002147 "clear chief cell of parathyroid gland"^^xsd:string)
SubClassOf(obo:CL_0002147 obo:CL_0000446)

# Class: obo:CL_0002148 (dental pulp cell)
Expand Down Expand Up @@ -15640,7 +15644,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002202 "epithelial cell of tracheobronchi
EquivalentClasses(obo:CL_0002202 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007196)))
SubClassOf(obo:CL_0002202 obo:CL_0002632)

# Class: obo:CL_0002203 (Brush cell of epithelium proper of large intestine)
# Class: obo:CL_0002203 (brush cell of epithelium proper of large intestine)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) obo:IAO_0000115 obo:CL_0002203 "Brush cell found in the epithelial layer of the colon."^^xsd:string)
AnnotationAssertion(oboInOwl:created_by obo:CL_0002203 "tmeehan"^^xsd:string)
Expand All @@ -15649,7 +15653,7 @@ AnnotationAssertion(oboInOwl:hasAlternativeId obo:CL_0002203 "CL:1000387"^^xsd:s
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002203 "FMA:263222"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002203 "cell"^^xsd:string)
AnnotationAssertion(rdfs:comment obo:CL_0002203 "Brush cells are a distinct cell type from brush border cell-types."^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0002203 "Brush cell of epithelium proper of large intestine"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0002203 "brush cell of epithelium proper of large intestine"^^xsd:string)
EquivalentClasses(obo:CL_0002203 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059)))
SubClassOf(obo:CL_0002203 obo:CL_0002204)
SubClassOf(obo:CL_0002203 obo:CL_0002253)
Expand Down Expand Up @@ -16394,7 +16398,7 @@ AnnotationAssertion(oboInOwl:created_by obo:CL_0002265 "tmeehan"^^xsd:string)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002265 "2010-09-10T11:37:35Z"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002265 "FMA:268744"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002265 "colon D-cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002265 "colonc delta cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002265 "colonic delta cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002265 "delta cell of colon")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002265 "cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0002265 "type D cell of colon"^^xsd:string)
Expand Down Expand Up @@ -21055,7 +21059,7 @@ EquivalentClasses(obo:CL_0005018 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeV

# Class: obo:CL_0005019 (pancreatic epsilon cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14970313"^^xsd:string) obo:IAO_0000115 obo:CL_0005019 "Ghrelin secreting cells found in the found in the exocrine pancreas."^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14970313"^^xsd:string) obo:IAO_0000115 obo:CL_0005019 "Ghrelin secreting cells found in the exocrine pancreas."^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005019 "pancreatic E cell")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0005019 "cell"^^xsd:string)
AnnotationAssertion(rdfs:comment obo:CL_0005019 "In mammals the endocrine pancreas is called the Islets of Langerhans."^^xsd:string)
Expand Down Expand Up @@ -21653,6 +21657,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0009005 "GOC:pr")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0009005 "http://en.wikipedia.org/wiki/Salivary_gland")
AnnotationAssertion(rdfs:label obo:CL_0009005 "salivary gland cell")
SubClassOf(obo:CL_0009005 obo:CL_0002371)
SubClassOf(obo:CL_0009005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001044))

# Class: obo:CL_0010000 (keratinized cell of hair follicle)

Expand Down Expand Up @@ -22629,13 +22634,13 @@ EquivalentClasses(obo:CL_1000322 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeV
SubClassOf(obo:CL_1000322 obo:CL_0000069)
SubClassOf(obo:CL_1000322 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009970))

# Class: obo:CL_1000323 (pylroric gastric gland goblet cell)
# Class: obo:CL_1000323 (pyloric gastric gland goblet cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) obo:IAO_0000115 obo:CL_1000323 "A goblet cell that is part of the epithelium of pyloric gland."^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000323 "FMA:263061"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000323 "goblet cell of epithelium of pyloric gland")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_1000323 "cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_1000323 "pylroric gastric gland goblet cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_1000323 "pyloric gastric gland goblet cell"^^xsd:string)
EquivalentClasses(obo:CL_1000323 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008861)))
SubClassOf(obo:CL_1000323 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000483 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008861))))

Expand Down

0 comments on commit 9050042

Please sign in to comment.