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Merge branch 'master' into release-2021-04-22
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@shawntanzk
shawntanzk committed Apr 22, 2021
2 parents e151cef + aa6a054 commit 9c13548
Showing 1 changed file with 84 additions and 12 deletions.
96 changes: 84 additions & 12 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -1892,6 +1892,12 @@ Declaration(Class(obo:CL_0009025))
Declaration(Class(obo:CL_0009026))
Declaration(Class(obo:CL_0009027))
Declaration(Class(obo:CL_0009028))
Declaration(Class(obo:CL_0009029))
Declaration(Class(obo:CL_0009030))
Declaration(Class(obo:CL_0009031))
Declaration(Class(obo:CL_0009032))
Declaration(Class(obo:CL_0009033))
Declaration(Class(obo:CL_0009034))
Declaration(Class(obo:CL_0010000))
Declaration(Class(obo:CL_0010001))
Declaration(Class(obo:CL_0010002))
Expand Down Expand Up @@ -22341,6 +22347,72 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009028 <http://purl.obolibrary.org
AnnotationAssertion(rdfs:label obo:CL_0009028 "intestinal crypt stem cell of appendix")
EquivalentClasses(obo:CL_0009028 ObjectIntersectionOf(obo:CL_0002250 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013486)))

# Class: obo:CL_0009029 (mesothelial cell of appendix)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009029 "A mesothelial cell that is located in a vermiform appendix.")
AnnotationAssertion(oboInOwl:created_by obo:CL_0009029 <http://orcid.org/0000-0002-2825-0621>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "appendix mesothelial cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "mesothelial cell of appendix vermiformis")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "mesothelial cell of vermiform appendix")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0009029 <http://purl.obolibrary.org/obo/pato#location_grouping>)
AnnotationAssertion(rdfs:label obo:CL_0009029 "mesothelial cell of appendix")
EquivalentClasses(obo:CL_0009029 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))

# Class: obo:CL_0009030 (enteroendocrine cell of appendix)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009030 "An intestinal enteroendocrine cell that is located in a vermiform appendix.")
AnnotationAssertion(oboInOwl:created_by obo:CL_0009030 <http://orcid.org/0000-0002-2825-0621>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "appendix enteroendocrine cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "enteroendocrine cell of appendix vermiformis")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "enteroendocrine cell of vermiform appendix")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0009030 <http://purl.obolibrary.org/obo/pato#location_grouping>)
AnnotationAssertion(rdfs:label obo:CL_0009030 "enteroendocrine cell of appendix")
EquivalentClasses(obo:CL_0009030 ObjectIntersectionOf(obo:CL_1001516 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))

# Class: obo:CL_0009031 (T cell of appendix)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009031 "A T cell that is located in a vermiform appendix.")
AnnotationAssertion(oboInOwl:created_by obo:CL_0009031 <http://orcid.org/0000-0002-2825-0621>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "T cell of appendix vermiformis")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "T cell of vermiform appendix")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "appendix T cell")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0009031 <http://purl.obolibrary.org/obo/pato#location_grouping>)
AnnotationAssertion(rdfs:label obo:CL_0009031 "T cell of appendix")
EquivalentClasses(obo:CL_0009031 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))

# Class: obo:CL_0009032 (B cell of appendix)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009032 "A B cell that is located in a vermiform appendix.")
AnnotationAssertion(oboInOwl:created_by obo:CL_0009032 <http://orcid.org/0000-0002-2825-0621>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "B cell of appendix vermiformis")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "B cell of vermiform appendix")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "appendix B cell")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0009032 <http://purl.obolibrary.org/obo/pato#location_grouping>)
AnnotationAssertion(rdfs:label obo:CL_0009032 "B cell of appendix")
EquivalentClasses(obo:CL_0009032 ObjectIntersectionOf(obo:CL_0000236 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))

# Class: obo:CL_0009033 (plasma cell of appendix)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009033 "A plasma cell that is located in a vermiform appendix.")
AnnotationAssertion(oboInOwl:created_by obo:CL_0009033 <http://orcid.org/0000-0002-2825-0621>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "appendix plasma cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "plasma cell of appendix vermiformis")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "plasma cell of vermiform appendix")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0009033 <http://purl.obolibrary.org/obo/pato#location_grouping>)
AnnotationAssertion(rdfs:label obo:CL_0009033 "plasma cell of appendix")
EquivalentClasses(obo:CL_0009033 ObjectIntersectionOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))

# Class: obo:CL_0009034 (dendritic cell of appendix)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009034 "A dendritic cell that is located in a vermiform appendix.")
AnnotationAssertion(oboInOwl:created_by obo:CL_0009034 <http://orcid.org/0000-0002-2825-0621>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "appendix dendritic cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "dendritic cell of appendix vermiformis")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "dendritic cell of vermiform appendix")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0009034 <http://purl.obolibrary.org/obo/pato#location_grouping>)
AnnotationAssertion(rdfs:label obo:CL_0009034 "dendritic cell of appendix")
EquivalentClasses(obo:CL_0009034 ObjectIntersectionOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))

# Class: obo:CL_0010000 (keratinized cell of hair follicle)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/417>) obo:IAO_0000115 obo:CL_0010000 "A hair follicle matrix region cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the hair bulb to become the hair medulla cortex and hair root sheath.")
Expand Down Expand Up @@ -27564,9 +27636,9 @@ SubClassOf(obo:CL_4023008 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_0001893

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023009 "A glutamatergic neuron located in the cerebral cortex that projects to structures not derived from telencephalon.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023009 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023009 "ILX:0770101")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023009 "ET projecting neuron")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023009 "extratelencephalic-projecting glutamatergic cortical neuron")
SubClassOf(obo:CL_4023009 obo:CL_0000679)
SubClassOf(obo:CL_4023009 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))
Expand Down Expand Up @@ -27597,9 +27669,9 @@ EquivalentClasses(obo:CL_4023011 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeV

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023012 "A glutamatergic neuron located in the cerebral cortex that projects axons locally rather than distantly.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023012 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023012 "ILX:0770103")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023012 "NP neuron")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023012 "near-projecting glutamatergic cortical neuron")
SubClassOf(obo:CL_4023012 obo:CL_0000679)
SubClassOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))
Expand All @@ -27608,8 +27680,8 @@ SubClassOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023013 "A glutamatergic neuron located in the cerebral cortex that projects to the thalamus.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023013 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023013 "CT projecting neuron")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023013 "corticothalamic-projecting glutamatergic cortical neuron")
SubClassOf(obo:CL_4023013 obo:CL_0000679)
SubClassOf(obo:CL_4023013 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))
Expand Down Expand Up @@ -27845,13 +27917,13 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023041 <http://purl.obolibrary.org
AnnotationAssertion(rdfs:label obo:CL_4023041 "L5 extratelencephalic projecting glutamatergic cortical neuron")
SubClassOf(obo:CL_4023041 obo:CL_4023009)

# Class: obo:CL_4023042 (L6 corticothalamic-projecting projecting glutamatergic cortical neuron)
# Class: obo:CL_4023042 (L6 corticothalamic-projecting glutamatergic cortical neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023042 "A corticothalamic-projecting neuron with a soma found in cortical layer 6.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023042 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023042 "L6 CT")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023042 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023042 "L6 corticothalamic-projecting projecting glutamatergic cortical neuron")
AnnotationAssertion(rdfs:label obo:CL_4023042 "L6 corticothalamic-projecting glutamatergic cortical neuron")
SubClassOf(obo:CL_4023042 obo:CL_4023013)
SubClassOf(obo:CL_4023042 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_0010225))

Expand All @@ -27867,24 +27939,24 @@ SubClassOf(obo:CL_4023043 obo:CL_4023012)
SubClassOf(obo:CL_4023043 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))
SubClassOf(obo:CL_4023043 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090))

# Class: obo:CL_4023044 (non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus))
# Class: obo:CL_4023044 (non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus))

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") Annotation(oboInOwl:hasDbXref "PMID:24137110") Annotation(oboInOwl:hasDbXref "PMID:9236245") obo:IAO_0000115 obo:CL_4023044 "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that does not project to the medulla. Non-MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023044 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023044 "non-MY ET MOp (Mus)")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023044 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023044 "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)")
AnnotationAssertion(rdfs:label obo:CL_4023044 "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)")
SubClassOf(obo:CL_4023044 obo:CL_4023041)
SubClassOf(obo:CL_4023044 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))
SubClassOf(obo:CL_4023044 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090))

# Class: obo:CL_4023045 (medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus))
# Class: obo:CL_4023045 (medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus))

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") Annotation(oboInOwl:hasDbXref "PMID:24137110") Annotation(oboInOwl:hasDbXref "PMID:9236245") obo:IAO_0000115 obo:CL_4023045 "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that projects to the medulla. MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023045 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023045 "MY ET MOp (Mus)")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023045 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023045 "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)")
AnnotationAssertion(rdfs:label obo:CL_4023045 "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)")
SubClassOf(obo:CL_4023045 obo:CL_4023041)
SubClassOf(obo:CL_4023045 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))
SubClassOf(obo:CL_4023045 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090))
Expand Down Expand Up @@ -27969,13 +28041,13 @@ AnnotationAssertion(rdfs:label obo:CL_4023052 "Betz upper motor neuron")
SubClassOf(obo:CL_4023052 obo:CL_0008049)
SubClassOf(obo:CL_4023052 ObjectSomeValuesFrom(obo:RO_0002120 obo:CL_0008039))

# Class: obo:CL_4023053 (spinal interneuron syanpsing Betz cell)
# Class: obo:CL_4023053 (spinal interneuron synapsing Betz cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.03.31.016972") Annotation(oboInOwl:hasDbXref "PMID:18558853") obo:IAO_0000115 obo:CL_4023053 "A Betz cell that syanpses with spinal interneurons.")
AnnotationAssertion(obo:RO_0002175 obo:CL_4023053 obo:NCBITaxon_9685)
AnnotationAssertion(obo:RO_0002175 obo:CL_4023053 obo:NCBITaxon_9989)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023053 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(rdfs:label obo:CL_4023053 "spinal interneuron syanpsing Betz cell")
AnnotationAssertion(rdfs:label obo:CL_4023053 "spinal interneuron synapsing Betz cell")
SubClassOf(obo:CL_4023053 obo:CL_0008049)
SubClassOf(obo:CL_4023053 ObjectSomeValuesFrom(obo:RO_0002120 obo:CL_0005000))

Expand Down Expand Up @@ -28126,4 +28198,4 @@ SubClassOf(obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 obo:GO_0005634)


SubClassOf(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/757>) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031))
)
)

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