Add 6 grouping terms for appendix

Addresses #999 , #1000 , #1018 , #1019 , #1020 and #1035
obophenotype · Apr 22, 2021 · c513759 · c513759
1 parent dd1b15d
commit c513759
Showing 1 changed file with 76 additions and 4 deletions.
diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -1892,6 +1892,12 @@ Declaration(Class(obo:CL_0009025))
 Declaration(Class(obo:CL_0009026))
 Declaration(Class(obo:CL_0009027))
 Declaration(Class(obo:CL_0009028))
+Declaration(Class(obo:CL_0009029))
+Declaration(Class(obo:CL_0009030))
+Declaration(Class(obo:CL_0009031))
+Declaration(Class(obo:CL_0009032))
+Declaration(Class(obo:CL_0009033))
+Declaration(Class(obo:CL_0009034))
 Declaration(Class(obo:CL_0010000))
 Declaration(Class(obo:CL_0010001))
 Declaration(Class(obo:CL_0010002))
@@ -22341,6 +22347,72 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009028 <http://purl.obolibrary.org
 AnnotationAssertion(rdfs:label obo:CL_0009028 "intestinal crypt stem cell of appendix")
 EquivalentClasses(obo:CL_0009028 ObjectIntersectionOf(obo:CL_0002250 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013486)))
 
+# Class: obo:CL_0009029 (mesothelial cell of appendix)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009029 "A mesothelial cell that is located in a vermiform appendix.")
+AnnotationAssertion(oboInOwl:created_by obo:CL_0009029 <http://orcid.org/0000-0002-2825-0621>)
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "appendix mesothelial cell")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "mesothelial cell of appendix vermiformis")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "mesothelial cell of vermiform appendix")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0009029 <http://purl.obolibrary.org/obo/pato#location_grouping>)
+AnnotationAssertion(rdfs:label obo:CL_0009029 "mesothelial cell of appendix")
+EquivalentClasses(obo:CL_0009029 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))
+
+# Class: obo:CL_0009030 (enteroendocrine cell of appendix)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009030 "An intestinal enteroendocrine cell that is located in a vermiform appendix.")
+AnnotationAssertion(oboInOwl:created_by obo:CL_0009030 <http://orcid.org/0000-0002-2825-0621>)
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "appendix enteroendocrine cell")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "enteroendocrine cell of appendix vermiformis")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "enteroendocrine cell of vermiform appendix")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0009030 <http://purl.obolibrary.org/obo/pato#location_grouping>)
+AnnotationAssertion(rdfs:label obo:CL_0009030 "enteroendocrine cell of appendix")
+EquivalentClasses(obo:CL_0009030 ObjectIntersectionOf(obo:CL_1001516 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))
+
+# Class: obo:CL_0009031 (T cell of appendix)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009031 "A T cell that is located in a vermiform appendix.")
+AnnotationAssertion(oboInOwl:created_by obo:CL_0009031 <http://orcid.org/0000-0002-2825-0621>)
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "T cell of appendix vermiformis")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "T cell of vermiform appendix")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "appendix T cell")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0009031 <http://purl.obolibrary.org/obo/pato#location_grouping>)
+AnnotationAssertion(rdfs:label obo:CL_0009031 "T cell of appendix")
+EquivalentClasses(obo:CL_0009031 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))
+
+# Class: obo:CL_0009032 (B cell of appendix)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009032 "A B cell that is located in a vermiform appendix.")
+AnnotationAssertion(oboInOwl:created_by obo:CL_0009032 <http://orcid.org/0000-0002-2825-0621>)
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "B cell of appendix vermiformis")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "B cell of vermiform appendix")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "appendix B cell")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0009032 <http://purl.obolibrary.org/obo/pato#location_grouping>)
+AnnotationAssertion(rdfs:label obo:CL_0009032 "B cell of appendix")
+EquivalentClasses(obo:CL_0009032 ObjectIntersectionOf(obo:CL_0000236 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))
+
+# Class: obo:CL_0009033 (plasma cell of appendix)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009033 "A plasma cell that is located in a vermiform appendix.")
+AnnotationAssertion(oboInOwl:created_by obo:CL_0009033 <http://orcid.org/0000-0002-2825-0621>)
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "appendix plasma cell")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "plasma cell of appendix vermiformis")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "plasma cell of vermiform appendix")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0009033 <http://purl.obolibrary.org/obo/pato#location_grouping>)
+AnnotationAssertion(rdfs:label obo:CL_0009033 "plasma cell of appendix")
+EquivalentClasses(obo:CL_0009033 ObjectIntersectionOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))
+
+# Class: obo:CL_0009034 (dendritic cell of appendix)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009034 "A dendritic cell that is located in a vermiform appendix.")
+AnnotationAssertion(oboInOwl:created_by obo:CL_0009034 <http://orcid.org/0000-0002-2825-0621>)
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "appendix dendritic cell")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "dendritic cell of appendix vermiformis")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "dendritic cell of vermiform appendix")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0009034 <http://purl.obolibrary.org/obo/pato#location_grouping>)
+AnnotationAssertion(rdfs:label obo:CL_0009034 "dendritic cell of appendix")
+EquivalentClasses(obo:CL_0009034 ObjectIntersectionOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))
+
 # Class: obo:CL_0010000 (keratinized cell of hair follicle)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/417>) obo:IAO_0000115 obo:CL_0010000 "A hair follicle matrix region cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the hair bulb to become the hair medulla cortex and hair root sheath.")
@@ -27564,9 +27636,9 @@ SubClassOf(obo:CL_4023008 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_0001893
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023009 "A glutamatergic neuron located in the cerebral cortex that projects to structures not derived from telencephalon.")
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023009 <http://orcid.org/0000-0001-7258-9596>)
-AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023009 "ILX:0770101")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023009 "ET projecting neuron")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
 AnnotationAssertion(rdfs:label obo:CL_4023009 "extratelencephalic-projecting glutamatergic cortical neuron")
 SubClassOf(obo:CL_4023009 obo:CL_0000679)
 SubClassOf(obo:CL_4023009 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))
@@ -27597,9 +27669,9 @@ EquivalentClasses(obo:CL_4023011 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeV
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023012 "A glutamatergic neuron located in the cerebral cortex that projects axons locally rather than distantly.")
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023012 <http://orcid.org/0000-0001-7258-9596>)
-AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023012 "ILX:0770103")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023012 "NP neuron")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
 AnnotationAssertion(rdfs:label obo:CL_4023012 "near-projecting glutamatergic cortical neuron")
 SubClassOf(obo:CL_4023012 obo:CL_0000679)
 SubClassOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))
@@ -27608,8 +27680,8 @@ SubClassOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023013 "A glutamatergic neuron located in the cerebral cortex that projects to the thalamus.")
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> obo:CL_4023013 <http://orcid.org/0000-0001-7258-9596>)
-AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023013 "CT projecting neuron")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
 AnnotationAssertion(rdfs:label obo:CL_4023013 "corticothalamic-projecting glutamatergic cortical neuron")
 SubClassOf(obo:CL_4023013 obo:CL_0000679)
 SubClassOf(obo:CL_4023013 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))
@@ -28126,4 +28198,4 @@ SubClassOf(obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 obo:GO_0005634)
 
 
 SubClassOf(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/757>) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031))
-)
+)