NTR-SST-GABAergic-neuron-of-the-striatum (#2812)

* NTR-SST-GABAergic-neuron-of-the-striatum Fixes #2797 * Update cl-edit.owl
obophenotype · Nov 28, 2024 · f5673e6 · f5673e6
1 parent 76f0a39
commit f5673e6
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Showing 2 changed files with 77 additions and 61 deletions.
diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -3087,6 +3087,7 @@ Declaration(Class(obo:CL_4042033))
 Declaration(Class(obo:CL_4042034))
 Declaration(Class(obo:CL_4042035))
 Declaration(Class(obo:CL_4042036))
+Declaration(Class(obo:CL_4042037))
 Declaration(Class(obo:CL_4042039))
 Declaration(Class(obo:CL_4042040))
 Declaration(Class(obo:CL_4047006))
@@ -32793,6 +32794,20 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38020069") rdfs:comment
 AnnotationAssertion(rdfs:label obo:CL_4042036 "melanin-concentrating hormone neuron"@en)
 SubClassOf(obo:CL_4042036 obo:CL_2000029)
 
+# Class: obo:CL_4042037 (sst GABAergic neuron of the striatum)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30131490") Annotation(oboInOwl:hasDbXref "PMID:30467465") Annotation(oboInOwl:hasDbXref "PMID:33742131") obo:IAO_0000115 obo:CL_4042037 "A interneuron of the striatum expressing gamma-aminobutyric acid and somatostatin. This interneuron has a fusiform soma with a diameter between 9 - 25 µm, it has a long axon up to the length of 1mm. This neuron type displays a low threshold Ca2+ spike (LTS), a high input resistance, and the expression of long-lasting plateau potentials following depolarization from rest.")
+AnnotationAssertion(terms:contributor obo:CL_4042037 <https://orcid.org/0000-0002-0098-8958>)
+AnnotationAssertion(terms:date obo:CL_4042037 "2024-11-27T18:33:46Z"^^xsd:dateTime)
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30131490") oboInOwl:hasBroadSynonym obo:CL_4042037 "SOM cell")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33742131") oboInOwl:hasRelatedSynonym obo:CL_4042037 "striatal SST+ IN")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30467465") Annotation(oboInOwl:hasDbXref "PMID:33742131") rdfs:comment obo:CL_4042037 "Some striatal SST GABAergic neurons can co-release glutamate and generate excitation-inhibition responses in postsynaptic neurons. This interneuron type has the least dense dendritic branches in the striatum. In the dorsomedial striatum these neurons regulate the activity of striatal projection neurons.")
+AnnotationAssertion(rdfs:label obo:CL_4042037 "sst GABAergic neuron of the striatum"@en)
+SubClassOf(obo:CL_4042037 obo:CL_0000540)
+SubClassOf(obo:CL_4042037 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002435))
+SubClassOf(obo:CL_4042037 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))
+SubClassOf(obo:CL_4042037 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000015665))
+
 # Class: obo:CL_4042039 (caudal ganglionic eminence derived neuron)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12593982") Annotation(oboInOwl:hasDbXref "PMID:12637172") Annotation(oboInOwl:hasDbXref "PMID:20130169") Annotation(oboInOwl:hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK98190/") obo:IAO_0000115 obo:CL_4042039 "A neuron of the central nervous system that develops from a caudal ganglionic eminence.")
@@ -33378,6 +33393,10 @@ AnnotationAssertion(rdfs:comment obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 "ID wa
 AnnotationAssertion(rdfs:label obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 "obsolete D96882F1-8709-49AB-BCA9-772A67EA6C33")
 AnnotationAssertion(owl:deprecated obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 "true"^^xsd:boolean)
 
+# Class: obo:GO_0051932 (synaptic transmission, GABAergic)
+
+EquivalentClasses(obo:GO_0051932 ObjectIntersectionOf(obo:GO_0007268 ObjectSomeValuesFrom(obo:RO_0000057 obo:CHEBI_59888) ObjectSomeValuesFrom(obo:RO_0000057 obo:CL_0000617)))
+
 
 SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000160)) obo:CL_0000164)
 SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945)) obo:CL_0000164)