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[Text def] Cell types with missing definition #2283

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aleixpuigb opened this issue Feb 19, 2024 · 1 comment · Fixed by #2289
Closed

[Text def] Cell types with missing definition #2283

aleixpuigb opened this issue Feb 19, 2024 · 1 comment · Fixed by #2289

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@AvolaAmg
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CL term
kidney interstitial fibroblast
A fibroblast that is located in the interstitial compartment of the kidney
database_cross_reference
PMID:10559635

omentum preadipocyte
a preadipocyte that is part of the omentum
database_cross_reference
PMID:21484051

perirenal preadipocyte
a preadipocyte that is part of the perirenal fat tissue
database_cross_reference
PMID:31079959

kidney medulla cell
A cell that is part of the renal medulla
database_cross_reference
PMID:22343825

kidney cortex interstitial cell
A cell that is located in the interstitial compartment of the renal cortex
database_cross_reference
PMID:18575881

kidney medulla interstitial cell
A cell that is located in the interstitial compartment of the renal medulla
database_cross_reference
[PMID:21359760]
DOI: 10.1385/0-89603-335-X:437

kidney inner medulla interstitial cell
A cell that is located in the interstitial compartment of the inner renal medulla
database_cross_reference
PMID: 21359760 DOI: 10.1385/0-89603-335-X:437

kidney outer medulla interstitial cell
A cell that is located in the interstitial compartment of the outer renal medulla
database_cross_reference
PMID:21359760 DOI: 10.1385/0-89603-335-X:437
PMID:8694267 DOI: 10.1007/BF00186688

kidney nerve cell

question I have some doubts about this. from my understanding "kidney nerve cell" points to a nerve in the kidney, but a nerve is not a cell but a bundle of axons so one cannot define it as a cell (?).

kidney resident dendritic cell
A dendritic cell that is resident in the kidney
database_cross_reference
PMID: 34843404

question : in this reference, they found that the dendritic cells in the scRNA-seq were divided into Cd11+ dendritic cells, Cd11− dendritic cells, and plasmacytoid dendritic cell clusters. Can I add this in the definition or it is too ambiguous to say? (considering that it is just one paper on scRNA-seq that sees this)

kidney blood vessel cell
a blood vessel cell that is part of the kidney
PMID:34843404

vasa recta cell
A cell that is part of the vasa recta
PMID:24381184
PMID:12529271

Are these references good enough or should I use something more specific?
Can you use the same reference for two different cell types?

@anitacaron anitacaron linked a pull request Feb 22, 2024 that will close this issue
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