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Addresses #2154 [NTR-cxg] cortical region-agnostic L2/3-6 intratelencephalic projecting glutamatergic cortical neuron (by layer) #2181

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Oct 13, 2023
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Addresses #2154 [NTR-cxg] cortical region-agnostic L2/3-6 intratelencephalic projecting glutamatergic cortical neuron (by layer) #2181

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3e26887
Addresses #2154 [NTR] IT projecting glu cortical neurons by layer
Oct 12, 2023
cb39a25
Merge branch 'master' into 2154-NTR-IT_projecting_glu_neuron
Oct 12, 2023
29c33ca
Update cl-edit.owl
Oct 13, 2023
544fdb6
Merge branch '2154-NTR-IT_projecting_glu_neuron' of https://github.co…
Oct 13, 2023
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78 changes: 74 additions & 4 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -2937,6 +2937,13 @@ Declaration(Class(obo:CL_4030055))
Declaration(Class(obo:CL_4030056))
Declaration(Class(obo:CL_4030057))
Declaration(Class(obo:CL_4030058))
Declaration(Class(obo:CL_4030059))
Declaration(Class(obo:CL_4030060))
Declaration(Class(obo:CL_4030061))
Declaration(Class(obo:CL_4030062))
Declaration(Class(obo:CL_4030063))
Declaration(Class(obo:CL_4030064))
Declaration(Class(obo:CL_4030065))
Declaration(Class(obo:CL_4032000))
Declaration(Class(obo:CL_4032001))
Declaration(Class(obo:CL_4033000))
Expand Down Expand Up @@ -29464,7 +29471,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023047 "L2/3 IT M1")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023047 "L2/3 IT MOp")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023047 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023047 "L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex")
EquivalentClasses(obo:CL_4023047 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440000)))
EquivalentClasses(obo:CL_4023047 ObjectIntersectionOf(obo:CL_4030059 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)))

# Class: obo:CL_4023048 (L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex)

Expand All @@ -29476,7 +29483,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023048 "L4/5 IT M1")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023048 "L4/5 IT MOp")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023048 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023048 "L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex")
EquivalentClasses(obo:CL_4023048 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440001)))
EquivalentClasses(obo:CL_4023048 ObjectIntersectionOf(obo:CL_4030062 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)))

# Class: obo:CL_4023049 (L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex)

Expand All @@ -29488,7 +29495,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023049 "L5 IT M1")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023049 "L5 IT MOp")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023049 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023049 "L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex")
EquivalentClasses(obo:CL_4023049 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005394)))
EquivalentClasses(obo:CL_4023049 ObjectIntersectionOf(obo:CL_4030064 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)))

# Class: obo:CL_4023050 (L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex)

Expand All @@ -29500,7 +29507,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023050 "L6 IT M1")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023050 "L6 IT MOp")
AnnotationAssertion(oboInOwl:inSubset obo:CL_4023050 <http://purl.obolibrary.org/obo/cl#BDS_subset>)
AnnotationAssertion(rdfs:label obo:CL_4023050 "L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex")
EquivalentClasses(obo:CL_4023050 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395)))
EquivalentClasses(obo:CL_4023050 ObjectIntersectionOf(obo:CL_4030065 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)))
SubClassOf(obo:CL_4023050 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070019))

# Class: obo:CL_4023051 (vascular leptomeningeal cell)
Expand Down Expand Up @@ -31035,6 +31042,69 @@ AnnotationAssertion(Annotation(oboInOwl:SynonymTypeProperty obo:OMO_0003000) Ann
AnnotationAssertion(rdfs:label obo:CL_4030058 "TCR-positive macrophage")
EquivalentClasses(obo:CL_4030058 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042101)))

# Class: obo:CL_4030059 (L2/3 intratelencephalic projecting glutamatergic neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasDbXref "PMID:37292694") obo:IAO_0000115 obo:CL_4030059 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 2/3.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030059 <https://orcid.org/0000-0003-4389-9821>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030059 "2023-10-10T14:10:21Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030059 "L2/3 IT")
AnnotationAssertion(rdfs:label obo:CL_4030059 "L2/3 intratelencephalic projecting glutamatergic neuron")
EquivalentClasses(obo:CL_4030059 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440000)))

# Class: obo:CL_4030060 (L2 intratelencephalic projecting glutamatergic neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") obo:IAO_0000115 obo:CL_4030060 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 2.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030060 <https://orcid.org/0000-0003-4389-9821>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030060 "2023-10-10T14:10:36Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030060 "L2 IT")
AnnotationAssertion(rdfs:label obo:CL_4030060 "L2 intratelencephalic projecting glutamatergic neuron")
EquivalentClasses(obo:CL_4030060 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005391)))

# Class: obo:CL_4030061 (L3 intratelencephalic projecting glutamatergic neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") obo:IAO_0000115 obo:CL_4030061 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030061 <https://orcid.org/0000-0003-4389-9821>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030061 "2023-10-10T14:10:47Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030061 "L3 IT")
AnnotationAssertion(rdfs:label obo:CL_4030061 "L3 intratelencephalic projecting glutamatergic neuron")
EquivalentClasses(obo:CL_4030061 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005392)))

# Class: obo:CL_4030062 (L4/5 intratelencephalic projecting glutamatergic neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") obo:IAO_0000115 obo:CL_4030062 "An intratelencephalic-projecting glutamatergic with a soma located in cortical layer 4/5.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030062 <https://orcid.org/0000-0003-4389-9821>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030062 "2023-10-10T14:11:04Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030062 "L4/5 IT")
AnnotationAssertion(rdfs:label obo:CL_4030062 "L4/5 intratelencephalic projecting glutamatergic neuron")
EquivalentClasses(obo:CL_4030062 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440001)))

# Class: obo:CL_4030063 (L4 intratelencephalic projecting glutamatergic neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") obo:IAO_0000115 obo:CL_4030063 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 4.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030063 <https://orcid.org/0000-0003-4389-9821>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030063 "2023-10-10T14:11:25Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030063 "L4 IT")
AnnotationAssertion(rdfs:label obo:CL_4030063 "L4 intratelencephalic projecting glutamatergic neuron")
EquivalentClasses(obo:CL_4030063 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005393)))

# Class: obo:CL_4030064 (L5 intratelencephalic projecting glutamatergic neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37609206") obo:IAO_0000115 obo:CL_4030064 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030064 <https://orcid.org/0000-0003-4389-9821>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030064 "2023-10-10T14:11:59Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:SynonymTypeProperty obo:OMO_0003000) Annotation(oboInOwl:hasDbXref "PMID:37292694") oboInOwl:hasRelatedSynonym obo:CL_4030064 "L5 IT")
AnnotationAssertion(rdfs:label obo:CL_4030064 "L5 intratelencephalic projecting glutamatergic neuron")
EquivalentClasses(obo:CL_4030064 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005394)))

# Class: obo:CL_4030065 (L6 intratelencephalic projecting glutamatergic neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37609206") obo:IAO_0000115 obo:CL_4030065 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 6.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030065 <https://orcid.org/0000-0003-4389-9821>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030065 "2023-10-10T14:12:23Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030065 "L6 IT")
AnnotationAssertion(rdfs:label obo:CL_4030065 "L6 intratelencephalic projecting glutamatergic neuron")
EquivalentClasses(obo:CL_4030065 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395)))

# Class: obo:CL_4032000 (club-like cell of the urethral epithelium)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875") Annotation(oboInOwl:hasDbXref "PMID:32497356") obo:IAO_0000115 obo:CL_4032000 "An epithelial cell of the urethra that has an expression profile similar to lung club cells. Club-like cells of the urethra epithelium are similar to lung club cells in their expression of SCGB1A1 and in their enrichment of immunomodulatory programs.")
Expand Down