Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixes #1266 populate mononuclear phagocyte #2208

Merged
merged 6 commits into from
Nov 13, 2023
Merged

Fixes #1266 populate mononuclear phagocyte #2208

Changes from all commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
2454a4f
Fixes #1266 populate mononuclear phagocyte
aleixpuigb Oct 26, 2023
8d369b2
Fix hierarchy
aleixpuigb Oct 27, 2023
b39d4f4
Merge branch 'master' into 1266_mononuclear_phagocyte
Nov 2, 2023
d546b57
Merge branch 'master' into 1266_mononuclear_phagocyte
aleixpuigb Nov 9, 2023
7e6e5fa
Add dendritic cell and monocyte
aleixpuigb Nov 13, 2023
5b47547
Merge branch 'master' into 1266_mononuclear_phagocyte
aleixpuigb Nov 13, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions src/ontology/cl-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4300,6 +4300,7 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000092 "chondroclast")
AnnotationAssertion(rdfs:comment obo:CL_0000092 "Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid.")
AnnotationAssertion(rdfs:label obo:CL_0000092 "osteoclast")
EquivalentClasses(obo:CL_0000092 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001474) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001850) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001937) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007597) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000011178) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001954) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045453)))
SubClassOf(obo:CL_0000092 obo:CL_0000518)
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Did not see this edit reflected in tasks of related ticket.

SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000092 obo:CL_0000766)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000092 obo:CL_0001035)
SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000576))
Expand Down Expand Up @@ -4500,6 +4501,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000113 "BTO:0001433")
AnnotationAssertion(rdfs:label obo:CL_0000113 "mononuclear phagocyte")
EquivalentClasses(obo:CL_0000113 ObjectIntersectionOf(obo:CL_0000518 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000113 obo:CL_0000518)
SubClassOf(obo:CL_0000113 obo:CL_0000842)

# Class: obo:CL_0000114 (surface ectodermal cell)

Expand Down Expand Up @@ -5643,6 +5645,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000235 "histiocyte")
AnnotationAssertion(rdfs:comment obo:CL_0000235 "Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid.")
AnnotationAssertion(rdfs:label obo:CL_0000235 "macrophage")
EquivalentClasses(obo:CL_0000235 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0031268)))
SubClassOf(obo:CL_0000235 obo:CL_0000113)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000235 obo:CL_0000766)
SubClassOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000576))

Expand Down Expand Up @@ -7206,6 +7209,7 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000451 "interdigitating c
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000451 "veiled cell")
AnnotationAssertion(rdfs:label obo:CL_0000451 "dendritic cell")
EquivalentClasses(obo:CL_0000451 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042613) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019882) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045580)))
SubClassOf(obo:CL_0000451 obo:CL_0000113)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000451 obo:CL_0000738)
DisjointClasses(obo:CL_0000451 obo:CL_0000542)

Expand Down Expand Up @@ -8294,6 +8298,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000576 "FMA:62864")
AnnotationAssertion(rdfs:comment obo:CL_0000576 "Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid.")
AnnotationAssertion(rdfs:label obo:CL_0000576 "monocyte")
EquivalentClasses(obo:CL_0000576 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030225) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030316) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043011)))
SubClassOf(obo:CL_0000576 obo:CL_0000113)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000576 obo:CL_0000766)
SubClassOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000559))

Expand Down