NTR mesenchymal lymphoid tissue organizer cell #2610
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#gogoeditdiff |
Here's a diff of how these changes impact the classified ontology (on -simple file):Ontology comparisonLeft
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Ontology importsOntology annotationsmesenchymal lymphoid tissue organizer cell
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Here's a diff of your edit file (unreasoned)Ontology comparisonLeft
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Ontology importsOntology annotationsmesenchymal lymphoid tissue organizer cell
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I think more discussion needed on this one. Looks like we should have a general cell type + maybe one for fetal gut (based on Elementaite). Needs ref that supports adult. I think assertions are complex enough that it would be much better if we could add minirefs in text defs so that users and future editors know exactly which refs to go to to check assertions.
src/ontology/cl-edit.owl
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| @@ -32490,6 +32491,16 @@ AnnotationAssertion(terms:date obo:CL_4047012 "2024-09-06T08:41:39Z"^^xsd:dateTi | |||
| AnnotationAssertion(rdfs:label obo:CL_4047012 "angiogenic pericyte"@en) | |||
| SubClassOf(obo:CL_4047012 obo:CL_0000669) | |||
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| # Class: obo:CL_4047022 (mesenchymal lymphoid tissue organizer cell) | |||
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| AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31201308") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047022 "A stromal cell found in the adult gut that plays a crucial role in the formation and maintenance of gut-associated lymphoid tissues (GALTs). This cell is characterized by it's ability to interact with lymphoid tissue inducer (LTi) cells, express lymphotoxin beta receptor (LTβR) and vascular cell adhesion molecule (VCAM), produce chemokines and cytokines for immune cell recruitment and positioning, and contribute to the structural organization of lymphoid tissues within the intestinal environment. mLTo cells are distinguished from other stromal cells by their specific function in orchestrating the development and maintenance of organized lymphoid structures in the gut, which are essential for intestinal immune responses and homeostasis.") | |||
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"PMID:31201308" not a relevant paper. Typo?
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Def reads nicely. Ref still needs fixing so can't check ref for how it supports def. Would like to close this by end of sprint if poss.
src/ontology/cl-edit.owl
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| @@ -32490,6 +32491,16 @@ AnnotationAssertion(terms:date obo:CL_4047012 "2024-09-06T08:41:39Z"^^xsd:dateTi | |||
| AnnotationAssertion(rdfs:label obo:CL_4047012 "angiogenic pericyte"@en) | |||
| SubClassOf(obo:CL_4047012 obo:CL_0000669) | |||
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| # Class: obo:CL_4047022 (mesenchymal lymphoid tissue organizer cell) | |||
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| AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31201308") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047022 "A stromal cell found in the adult gut that plays a crucial role in the formation and maintenance of gut-associated lymphoid tissues (GALTs). This cell is characterized by it's ability to interact with lymphoid tissue inducer (LTi) cells, express lymphotoxin beta receptor (LTβR) and vascular cell adhesion molecule (VCAM), produce chemokines and cytokines for immune cell recruitment and positioning, and contribute to the structural organization of lymphoid tissues within the intestinal environment. mLTo cells are distinguished from other stromal cells by their specific function in orchestrating the development and maintenance of organized lymphoid structures in the gut, which are essential for intestinal immune responses and homeostasis.") | |||
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Def reads nicely. Ref still needs fixing so can't check ref for how it supports def. Would like to close this by end of sprint if poss.
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Still needs some discussion but please fix PMIDs ASAP. |
definition, synonyms and refs added