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Obsolete neuronal brush cells and adjust logical definition of tanycyte #2653

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Obsolete neuronal brush cells and adjust logical definition of tanycyte #2653

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1ad2ef7
Obsolete neuronal brush cells and adjust logical definition of tanycyte
AvolaAmg Oct 16, 2024
9f91f3e
Update cl-edit.owl
AvolaAmg Oct 16, 2024
23fd4b8
Update merged_import.owl
AvolaAmg Oct 16, 2024
626920e
Merge branch 'master' into Obsolete-neuronal-brush-cell
Caroline-99 Oct 28, 2024
f1c599a
Merge branch 'master' into Obsolete-neuronal-brush-cell
AvolaAmg Oct 28, 2024
8b40e9a
Update cl-edit.owl
dosumis Dec 16, 2024
710ea6b
Merge branch 'master' into Obsolete-neuronal-brush-cell
Caroline-99 Dec 16, 2024
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13 changes: 8 additions & 5 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3158,6 +3158,7 @@ Declaration(Class(obo:GO_0031045))
Declaration(Class(obo:GO_0036053))
Declaration(Class(obo:GO_0036376))
Declaration(Class(obo:GO_0042599))
Declaration(Class(obo:GO_0044237))
Declaration(Class(obo:GO_0044316))
Declaration(Class(obo:GO_0045428))
Declaration(Class(obo:GO_0046697))
Expand Down Expand Up @@ -5163,6 +5164,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "BTO:0001780")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "FMA:62901")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") oboInOwl:hasExactSynonym obo:CL_0000162 "gastric parietal cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") Annotation(oboInOwl:hasDbXref "PMID:31613538") rdfs:comment obo:CL_0000162 "Parietal cells have dynamic, actin-supported microvilli that increase in number during active secretion, playing a crucial role in secreting hydrochloric acid and intrinsic factor. The structure and regulation of these microvilli are influenced by proteins such as ASAP3, which modulates Arf6 activity and actin assembly, thereby controlling microvilli formation and parietal cell function.")
AnnotationAssertion(rdfs:label obo:CL_0000162 "parietal cell")
SubClassOf(obo:CL_0000162 obo:CL_0000151)
Expand Down Expand Up @@ -8282,11 +8284,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo
AnnotationAssertion(rdfs:label obo:CL_0000554 "gastrin stimulating hormone secreting cell")
SubClassOf(obo:CL_0000554 obo:CL_0000167)

# Class: obo:CL_0000555 (neuronal brush cell)
# Class: obo:CL_0000555 (obsolete neuronal brush cell)

AnnotationAssertion(rdfs:label obo:CL_0000555 "neuronal brush cell")
SubClassOf(obo:CL_0000555 obo:CL_0000540)
SubClassOf(obo:CL_0000555 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017))
AnnotationAssertion(obo:IAO_0100001 obo:CL_0000555 obo:CL_4023161)
AnnotationAssertion(rdfs:label obo:CL_0000555 "obsolete neuronal brush cell")
AnnotationAssertion(owl:deprecated obo:CL_0000555 "true"^^xsd:boolean)

# Class: obo:CL_0000556 (megakaryocyte)

Expand Down Expand Up @@ -14658,7 +14660,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002085 "BTO:0001953")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002085 "FMA:54560")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29351662") oboInOwl:hasExactSynonym obo:CL_0002085 "stretch cell")
AnnotationAssertion(rdfs:label obo:CL_0002085 "tanycyte")
SubClassOf(obo:CL_0002085 obo:CL_0000683)
SubClassOf(obo:CL_0002085 obo:CL_0000065)
SubClassOf(obo:CL_0002085 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004670))

# Class: obo:CL_0002086 (specialized cardiac myocyte)
Expand Down Expand Up @@ -30643,6 +30645,7 @@ SubClassOf(obo:CL_4023160 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537))

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9193142") Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Unipolar_brush_cell&oldid=1045937026") obo:IAO_0000115 obo:CL_4023161 "An excitatory glutamatergic interneuron found in the granular layer of the cerebellar cortex and also in the granule cell domain of the cochlear nucleus. Unipolar brush cells have a round or oval cell body with usually a single short dendrite that ends in a brush-like tuft of short dendrites unique to them known as dendrioles.")
AnnotationAssertion(terms:contributor obo:CL_4023161 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023161 "neuronal brush cell")
AnnotationAssertion(rdfs:label obo:CL_4023161 "unipolar brush cell")
SubClassOf(obo:CL_4023161 obo:CL_0000099)
SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070025))
Expand Down
6 changes: 6 additions & 0 deletions src/ontology/imports/merged_import.owl
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Expand Up @@ -17077,6 +17077,12 @@ DisjointClasses(<http://purl.obolibrary.org/obo/CL_0000000> <http://purl.obolibr
DisjointClasses(<http://purl.obolibrary.org/obo/CL_0000000> <http://purl.obolibrary.org/obo/GO_0032991>)
DisjointClasses(<http://purl.obolibrary.org/obo/CL_0000000> <http://purl.obolibrary.org/obo/GO_0043226>)

# Class: <http://purl.obolibrary.org/obo/CL_0000555> (obsolete neuronal brush cell)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0100001> <http://purl.obolibrary.org/obo/CL_0000555> <http://purl.obolibrary.org/obo/CL_4023161>)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/CL_0000555> "https://github.com/obophenotype/cell-ontology/issues/2634")
AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/CL_0000555> "true"^^xsd:boolean)

# Class: <http://purl.obolibrary.org/obo/GO_0000011> (vacuole inheritance)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:mcc") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:10873824") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:14616069") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/GO_0000011> "The distribution of vacuoles into daughter cells after mitosis or meiosis, mediated by interactions between vacuoles and the cytoskeleton.")
Expand Down
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