Adjust hierarchy of somatosensory neurons (sensu Teleostei)

[AvolaAmg]

Fixes #2727

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-22/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-22/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

CAP motoneuron http://purl.obolibrary.org/obo/CL_0000532

Added

• CAP motoneuron IAO_0000115 "A primary motor neuron with its soma in the caudal region of a spinal cord. The axon of this motoneuron exit the spinal cord from one single point and innervates muscles from its lateral region."

  • hasDbXref "PMID:35431796"

  • hasDbXref "PMID:17971221"

• CAP motoneuron hasRelatedSynonym "cap cell"

  • hasDbXref "PMID:17971221"

• CAP motoneuron hasRelatedSynonym "caudal primary motor neuron"

  • hasDbXref "PMID:18077593"

• CAP motoneuron hasExactSynonym "CaP motorneuron"

  • hasDbXref "PMID:3746410"

UBERON_0010313 http://purl.obolibrary.org/obo/UBERON_0010313

Added

• Class: UBERON_0010313

middle primary motoneuron http://purl.obolibrary.org/obo/CL_4042037

Added

• middle primary motoneuron IAO_0000115 "A type of primary motor neuron located in the middle region of the spinal cord. This primary motor neuron type is characterized by their distinct axonal pathways that innervate the middle trunk muscles."

  • hasDbXref "PMID:35431796"

  • hasDbXref "PMID:3746410"

• middle primary motoneuron hasRelatedSynonym "MiP"

  • hasDbXref "PMID:3746410"

  • hasSynonymType OMO_0003000

• middle primary motoneuron contributor 0000-0002-0098-8958

• middle primary motoneuron label "middle primary motoneuron"@en

• middle primary motoneuron date "2024-11-13T13:39:28Z"^^dateTime

• middle primary motoneuron hasDbXref "ZFA:0005179"

• Class: middle primary motoneuron

• middle primary motoneuron SubClassOf primary motor neuron (sensu Teleostei)

primary interneuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000534

Removed

• primary interneuron (sensu Teleostei) SubClassOf CNS interneuron

Added

• primary interneuron (sensu Teleostei) SubClassOf spinal cord interneuron

primary motor neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000533

Removed

• primary motor neuron (sensu Teleostei) SubClassOf motor neuron

Added

• primary motor neuron (sensu Teleostei) SubClassOf spinal cord motor neuron

primary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000530

Added

• primary neuron (sensu Teleostei) SubClassOf RO_0002100 some UBERON_0002240

rostral primary motorneuron http://purl.obolibrary.org/obo/CL_4042038

Added

• rostral primary motorneuron IAO_0000115 "A type of primary motor neuron situated in the rostral region of the spinal cord. RoP neurons extend their axons to innervate the dorsal trunk musculature."

  • hasDbXref "PMID:35431796"

  • hasDbXref "PMID:3746410"

• rostral primary motorneuron contributor 0000-0002-0098-8958

• rostral primary motorneuron date "2024-11-13T13:42:01Z"^^dateTime

• rostral primary motorneuron label "rostral primary motorneuron"@en

• rostral primary motorneuron hasRelatedSynonym "RoP"

  • hasDbXref "PMID:3746410"

  • hasSynonymType OMO_0003000

• Class: rostral primary motorneuron

• rostral primary motorneuron SubClassOf primary motor neuron (sensu Teleostei)

secondary motor neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000536

Removed

• secondary motor neuron (sensu Teleostei) SubClassOf motor neuron

Added

• secondary motor neuron (sensu Teleostei) SubClassOf spinal cord motor neuron

secondary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000535

Removed

• secondary neuron (sensu Teleostei) SubClassOf BFO_0000002

Added

• secondary neuron (sensu Teleostei) SubClassOf RO_0002100 some UBERON_0002240

• secondary neuron (sensu Teleostei) SubClassOf UBERON_0010313

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

CAP motoneuron http://purl.obolibrary.org/obo/CL_0000532

Added

• CAP motoneuron definition "A primary motor neuron with its soma in the caudal region of a spinal cord. The axon of this motoneuron exit the spinal cord from one single point and innervates muscles from its lateral region."

  • database_cross_reference "PMID:35431796"

  • database_cross_reference "PMID:17971221"

• CAP motoneuron has_related_synonym "cap cell"

  • database_cross_reference "PMID:17971221"

• CAP motoneuron has_related_synonym "caudal primary motor neuron"

  • database_cross_reference "PMID:18077593"

• CAP motoneuron has_exact_synonym "CaP motorneuron"

  • database_cross_reference "PMID:3746410"

middle primary motoneuron http://purl.obolibrary.org/obo/CL_4042037

Added

• middle primary motoneuron definition "A type of primary motor neuron located in the middle region of the spinal cord. This primary motor neuron type is characterized by their distinct axonal pathways that innervate the middle trunk muscles."

  • database_cross_reference "PMID:35431796"

  • database_cross_reference "PMID:3746410"

• middle primary motoneuron has_related_synonym "MiP"

  • database_cross_reference "PMID:3746410"

  • has_synonym_type abbreviation

• middle primary motoneuron contributor 0000-0002-0098-8958

• middle primary motoneuron label "middle primary motoneuron"@en

• middle primary motoneuron date "2024-11-13T13:39:28Z"^^dateTime

• middle primary motoneuron database_cross_reference "ZFA:0005179"

• Class: middle primary motoneuron

• middle primary motoneuron SubClassOf primary motor neuron (sensu Teleostei)

primary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000530

Removed

• primary neuron (sensu Teleostei) SubClassOf has soma location some central nervous system

Added

• primary neuron (sensu Teleostei) SubClassOf has soma location some spinal cord

rostral primary motorneuron http://purl.obolibrary.org/obo/CL_4042038

Added

• rostral primary motorneuron definition "A type of primary motor neuron situated in the rostral region of the spinal cord. RoP neurons extend their axons to innervate the dorsal trunk musculature."

  • database_cross_reference "PMID:35431796"

  • database_cross_reference "PMID:3746410"

• rostral primary motorneuron contributor 0000-0002-0098-8958

• rostral primary motorneuron date "2024-11-13T13:42:01Z"^^dateTime

• rostral primary motorneuron label "rostral primary motorneuron"@en

• rostral primary motorneuron has_related_synonym "RoP"

  • database_cross_reference "PMID:3746410"

  • has_synonym_type abbreviation

• Class: rostral primary motorneuron

• rostral primary motorneuron SubClassOf primary motor neuron (sensu Teleostei)

secondary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000535

Removed

• secondary neuron (sensu Teleostei) SubClassOf has soma location some central nervous system

Added

• secondary neuron (sensu Teleostei) SubClassOf has soma location some spinal cord

• secondary neuron (sensu Teleostei) SubClassOf develops from some neural crest

[Caroline-99]

I have made two suggestions. Everything else looks good.