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Stomatogastric ganglion cell types of crabs, lobsters #2876

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Stomatogastric ganglion cell types of crabs, lobsters #2876

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f73b7f8
Create new_changes_CL
andreagaede Dec 19, 2024
ba0965e
Merge branch 'obophenotype:master' into stomatogastric_gagnglion_crab…
stevevanhooser Jan 6, 2025
305b313
Update new_changes_CL
stevevanhooser Jan 6, 2025
301fb69
new updates in owl language for stomatogastric ganglion of crabs and …
stevevanhooser Jan 7, 2025
562c014
cleaning so only edits to cl-edit.owl remain
stevevanhooser Jan 7, 2025
afa56d9
fixes during review
stevevanhooser Jan 7, 2025
e9170c7
Merge branch 'master' into stomatogastric_ganglion_crab_lobster
stevevanhooser Jan 7, 2025
54dd307
fixes during review 2
stevevanhooser Jan 7, 2025
2feed34
Merge branch 'stomatogastric_ganglion_crab_lobster' of https://github…
stevevanhooser Jan 7, 2025
79ea493
improved definition for lateral pyloric neuron, pyloric neuron
stevevanhooser Jan 7, 2025
eea1538
NCBITaxon_ corrected, changed SubClass to Annotation
stevevanhooser Jan 7, 2025
d3fa9b6
fix reintroduced NCBITaxon:
stevevanhooser Jan 7, 2025
282fd3b
change UBERON: to UBERON_
stevevanhooser Jan 7, 2025
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1 change: 0 additions & 1 deletion src/ontology/CHANGES
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106 changes: 105 additions & 1 deletion src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3146,6 +3146,14 @@ Declaration(Class(obo:CL_4052030))
Declaration(Class(obo:CL_4052031))
Declaration(Class(obo:CL_4052048))
Declaration(Class(obo:CL_4052049))
Declaration(Class(obo:CL_4070010))
Declaration(Class(obo:CL_4070011))
Declaration(Class(obo:CL_4070012))
Declaration(Class(obo:CL_4070013))
Declaration(Class(obo:CL_4070014))
Declaration(Class(obo:CL_4070015))
Declaration(Class(obo:CL_4070016))
Declaration(Class(obo:CL_4070017))
Declaration(Class(obo:CP_0000000))
Declaration(Class(obo:CP_0000025))
Declaration(Class(obo:CP_0000027))
Expand Down Expand Up @@ -33507,6 +33515,102 @@ SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_001576
SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036376))
SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_1990573))

# Class: obo:CL_4070010 (gastric mill neuron)

AnnotationAssertion(rdfs:label obo:CL_4070010 "gastric mill neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070010 "GM")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070010 "A motor neuron that moves the medial tooth forward")
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AnnotationAssertion(terms:contributor obo:CL_4070010 <https://orcid.org/0000-0002-1909-7004>)
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AnnotationAssertion(obo:RO_0002175 obo:CL_4070010 obo:NCBITaxon:6712)
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AnnotationAssertion(obo:RO_0002175 obo:CL_4070010 obo:NCBITaxon:6752)
SubClassOf(obo:CL_4070010 obo:CL_0000100)
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SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
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SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))
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# Class: obo:CL_4070011 (lateral gastric neuron)

AnnotationAssertion(rdfs:label obo:CL_4070011 "lateral gastric neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070011 "LG")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070011 "A motor neuron that closes the lateral teeth.")
AnnotationAssertion(terms:contributor obo:CL_4070011 <https://orcid.org/0000-0002-1909-7004>)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070011 obo:NCBITaxon:6712)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070011 obo:NCBITaxon:6752)
SubClassOf(obo:CL_4070011 obo:CL_0000100)
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070012 (inferior cardiac neuron)

AnnotationAssertion(rdfs:label obo:CL_4070012 "inferior cardiac neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070012 "IC")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070012 "A motor neuron that controls ventral stomach grooves leading to pyloric filter.")
AnnotationAssertion(terms:contributor obo:CL_4070012 <https://orcid.org/0000-0002-1909-7004>)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070012 obo:NCBITaxon:6712)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070012 obo:NCBITaxon:6752)
SubClassOf(obo:CL_4070012 obo:CL_0000100)
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070013 (ventricular dilator motor neuron)

AnnotationAssertion(rdfs:label obo:CL_4070013 "ventricular dilator motor neuron")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070013 "VD")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070013 "A motor neuron that controls ventral stomach grooves leading to pyloric filter.")
AnnotationAssertion(terms:contributor obo:CL_4070013 <https://orcid.org/0000-0002-1909-7004>)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070013 obo:NCBITaxon:6712)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070013 obo:NCBITaxon:6752)
SubClassOf(obo:CL_4070013 obo:CL_0000100)
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SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070014 (pyloric motor neuron)

AnnotationAssertion(rdfs:label obo:CL_4070014 "pyloric motor neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070014 "PY")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070014 "A motor neuron that controls pyloric filter movements; innervates the pyloric muscle.")
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AnnotationAssertion(terms:contributor obo:CL_4070014 <https://orcid.org/0000-0002-1909-7004>)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070014 obo:NCBITaxon:6712)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070014 obo:NCBITaxon:6752)
SubClassOf(obo:CL_4070014 obo:CL_0000100)
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070015 (pyloric dilator neuron)

AnnotationAssertion(rdfs:label obo:CL_4070015 "pyloric dilator neuron")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070015 "PD")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070015 "A motor neuron that controls the cardiopyloric valve.")
AnnotationAssertion(obo:RO_0002175 obo:CL_4070015 obo:NCBITaxon:6712)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070015 obo:NCBITaxon:6752)
AnnotationAssertion(terms:contributor obo:CL_4070015 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070015 obo:CL_0000100)
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070016 (anterior burster neuron)

AnnotationAssertion(rdfs:label obo:CL_4070016 "anterior burster neuron")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070016 "AB")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070016 "Pyloric pacemaker neuron that provides feedback to commissural ganglia (CoG) neurons.")
AnnotationAssertion(obo:RO_0002175 obo:CL_4070016 obo:NCBITaxon:6712)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070016 obo:NCBITaxon:6752)
AnnotationAssertion(terms:contributor obo:CL_4070016 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070016 obo:CL_0000099)
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070017 (lateral pyloric motor neuron)

AnnotationAssertion(rdfs:label obo:CL_4070017 "lateral pyloric motor neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070017 "LP")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070017 "A motor neuron that controls pyloric filter movements; innervates the lateral pyloric muscle.")
AnnotationAssertion(terms:contributor obo:CL_4070017 <https://orcid.org/0000-0002-1909-7004>)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070017 obo:NCBITaxon:6712)
AnnotationAssertion(obo:RO_0002175 obo:CL_4070017 obo:NCBITaxon:6752)
SubClassOf(obo:CL_4070017 obo:CL_0000100)
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6657))
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CP_0000000 (obsolete CP:0000000)

AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500)
Expand Down Expand Up @@ -33586,4 +33690,4 @@ SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945)) obo:CL_0000164)
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264)) obo:CL_0000164)
SubClassOf(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/757>) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031))
)
)