No synonyms added if name = env samples #56

obophenotype · Dec 1, 2021 · 135106d · 135106d
1 parent e7b7234
commit 135106d
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/src/ncbitaxon.py b/src/ncbitaxon.py
@@ -255,7 +255,10 @@ def convert(taxdmp_path, output_path, taxa=None):
                         print("WARN: Duplicate unique names", tax_ids, uniques)
                     for tax_id, unique in values:
                         labels[tax_id] = unique
-                        synonyms[tax_id].append([name, unique, "scientific name"])
+                        if name != 'environmental samples':
+                            synonyms[tax_id].append(
+                                [name, unique, "scientific name"]
+                            )
 
             with taxdmp.open("merged.dmp") as dmp:
                 for line in io.TextIOWrapper(dmp):