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cone cells needs these terms
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@shawntanzk
shawntanzk committed Nov 8, 2022
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Expand Up @@ -1001,6 +1001,24 @@ xref: IUPHARobj:72
xref: PANTHER:PTHR24227\:SF213
is_a: PR:000001128 ! chemokine receptor

[Term]
id: PR:000001224
name: medium-wave-sensitive opsin
namespace: protein
def: "An animal opsin that is a translation product of the human OPN1MW, OPN1MW2, or OPN1MW3 genes, 1:1 orthologs thereof, or a semi-ortholog thereof." [PRO:DAN, PRO:WCB]
comment: Category=gene. Note: The human OPN1MW, OPN1MW2, and OPN1MW3 genes encode identical proteins.
synonym: "Gcp" RELATED []
synonym: "GOP" EXACT []
synonym: "green cone photoreceptor pigment" EXACT []
synonym: "green-sensitive opsin" EXACT []
synonym: "M opsin" EXACT []
synonym: "medium wavelength-sensitive cone opsin" EXACT []
synonym: "OPN1MW" EXACT PRO-short-label [PRO:DNx]
synonym: "Opn1mw" RELATED []
synonym: "OPN1MW2" RELATED []
xref: IUPHARobj:2962
is_a: PR:000001119 ! animal opsin

[Term]
id: PR:000001226
name: high affinity interleukin-8 receptor
Expand All @@ -1023,6 +1041,20 @@ synonym: "opsin-4" EXACT []
xref: IUPHARobj:2758
is_a: PR:000001119 ! animal opsin

[Term]
id: PR:000001244
name: long-wave-sensitive opsin 1
namespace: protein
def: "An animal opsin that is a translation product of the human OPN1LW gene or a 1:1 ortholog thereof." [PRO:WCB]
comment: Category=gene.
synonym: "OPN1LW" EXACT PRO-short-label [PRO:DNx]
synonym: "RCP" RELATED Gene-based []
synonym: "red cone photoreceptor pigment" EXACT []
synonym: "red-sensitive opsin" EXACT []
synonym: "ROP" EXACT []
xref: IUPHARobj:2961
is_a: PR:000001119 ! animal opsin

[Term]
id: PR:000001254
name: C-C chemokine receptor type 1
Expand Down Expand Up @@ -11795,6 +11827,25 @@ relationship: has_component PR:000050026 {maxCardinality="1"} ! hemoglobin subun
relationship: has_component PR:000050468 {maxCardinality="2"} ! hemoglobin subunit beta N-1-deoxyfructosylated 1
relationship: has_component PR:000050468 {minCardinality="1"} ! hemoglobin subunit beta N-1-deoxyfructosylated 1

[Term]
id: PR:000050522
name: medium-wave-sensitive opsin (human)
namespace: protein
def: "A medium-wave-sensitive opsin that is encoded in the genome of human." [PRO:DAN]
comment: Category=organism-family. Note: The OPN1MW, OPN1MW2, and OPN1MW3 genes encode identical proteins.
synonym: "hOPN1MW" EXACT PRO-short-label [PRO:DAN]
synonym: "OPN1MW" NARROW Gene-based [UniProtKB:P04001]
synonym: "OPN1MW2" NARROW Gene-based [UniProtKB:P0DN77]
synonym: "OPN1MW3" NARROW Gene-based [UniProtKB:P0DN78]
is_a: PR:000001224 ! medium-wave-sensitive opsin
is_a: PR:000029067 ! Homo sapiens protein
intersection_of: PR:000001224 ! medium-wave-sensitive opsin
intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens
union_of: PR:P04001 ! medium-wave-sensitive opsin 1 (human)
union_of: PR:P0DN77 ! medium-wave-sensitive opsin 2 (human)
union_of: PR:P0DN78 ! medium-wave-sensitive opsin 3 (human)
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: PR:A1EA95
name: interleukin-7 receptor alpha chain (chicken)
Expand Down Expand Up @@ -14123,6 +14174,50 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus
relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:95697 ! Gfap (mouse)
relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus

[Term]
id: PR:P04000
name: long-wave-sensitive opsin 1 (human)
namespace: protein
def: "A long-wave-sensitive opsin 1 that is encoded in the genome of human." [PRO:WCB, UniProtKB:P04000]
comment: Category=organism-gene.
synonym: "hOPN1LW" EXACT PRO-short-label [PRO:DNx]
synonym: "OPN1LW" RELATED Gene-based [UniProtKB:P04000]
synonym: "RCP" RELATED Gene-based [UniProtKB:P04000]
synonym: "red cone photoreceptor pigment (human)" EXACT [UniProtKB:P04000]
synonym: "red-sensitive opsin (human)" EXACT [UniProtKB:P04000]
synonym: "ROP (human)" EXACT [UniProtKB:P04000]
xref: DTO:02100475
xref: Reactome:R-HSA-419769 "PR:P04000 located_in GO:0042622"
xref: UniProtKB:P04000
is_a: PR:000001244 ! long-wave-sensitive opsin 1
is_a: PR:000029067 ! Homo sapiens protein
intersection_of: PR:000001244 ! long-wave-sensitive opsin 1
intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=9936 ! OPN1LW (human)
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: PR:P04001
name: medium-wave-sensitive opsin 1 (human)
namespace: protein
def: "A medium-wave-sensitive opsin (human) that is a translation product of the OPN1MW gene in human." [PRO:DAN, UniProtKB:P04001]
comment: Category=organism-gene. Note: The proteins encoded by OPN1MW (this class), OPN1MW2 (PR:P0DN77), and OPN1MW3 (PR:P0DN78) are identical.
synonym: "GCP" RELATED Gene-based [UniProtKB:P04001]
synonym: "GOP (human)" BROAD [UniProtKB:P04001]
synonym: "green cone photoreceptor pigment (human)" BROAD [UniProtKB:P04001]
synonym: "green-sensitive opsin (human)" BROAD [UniProtKB:P04001]
synonym: "hOPN1MW1" EXACT PRO-short-label [PRO:DNx]
synonym: "OPN1MW" RELATED Gene-based [UniProtKB:P04001]
xref: DTO:02100474
xref: Reactome:R-HSA-391835 "PR:P04001 located_in GO:0097381"
xref: UniProtKB:P04001
is_a: PR:000050522 ! medium-wave-sensitive opsin (human)
intersection_of: PR:000050522 ! medium-wave-sensitive opsin (human)
intersection_of: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=4206 ! OPN1MW (human)
intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=4206 ! OPN1MW (human)
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: PR:P04053
name: DNA nucleotidylexotransferase (human)
Expand Down Expand Up @@ -15909,6 +16004,46 @@ intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=10514 ! SAA2 (human)
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: PR:P0DN77
name: medium-wave-sensitive opsin 2 (human)
namespace: protein
def: "A medium-wave-sensitive opsin (human) that is a translation product of the OPN1MW2 gene in human." [PRO:DAN, UniProtKB:P0DN77]
comment: Category=organism-gene. Note: The proteins encoded by OPN1MW (PR:P04001), OPN1MW2 (this class), and OPN1MW3 (PR:P0DN78) are identical.
synonym: "GOP (human)" BROAD [UniProtKB:P0DN77]
synonym: "green cone photoreceptor pigment (human)" BROAD [UniProtKB:P0DN77]
synonym: "green-sensitive opsin (human)" BROAD [UniProtKB:P0DN77]
synonym: "hOPN1MW2" EXACT PRO-short-label [PRO:DNx]
synonym: "OPN1MW2" RELATED Gene-based [UniProtKB:P0DN77]
synonym: "opsin 1 cone pigments medium-wave-sensitive 2 (human)" EXACT [UniProtKB:P0DN77]
xref: UniProtKB:P0DN77
is_a: PR:000050522 ! medium-wave-sensitive opsin (human)
intersection_of: PR:000050522 ! medium-wave-sensitive opsin (human)
intersection_of: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=26952 ! OPN1MW2 (human)
intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=26952 ! OPN1MW2 (human)
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: PR:P0DN78
name: medium-wave-sensitive opsin 3 (human)
namespace: protein
def: "A medium-wave-sensitive opsin (human) that is a translation product of the OPN1MW3 gene in human." [PRO:DAN, UniProtKB:P0DN78]
comment: Category=organism-gene. Note: The proteins encoded by OPN1MW (PR:P04001), OPN1MW2 (PR:P0DN77), and OPN1MW3 (this class) are identical.
synonym: "GOP (human)" BROAD [UniProtKB:P0DN78]
synonym: "green cone photoreceptor pigment (human)" BROAD [UniProtKB:P0DN78]
synonym: "green-sensitive opsin (human)" BROAD [UniProtKB:P0DN78]
synonym: "hOPN1MW3" EXACT PRO-short-label [PRO:DNx]
synonym: "OPN1MW3" RELATED Gene-based [UniProtKB:P0DN78]
synonym: "opsin 1 cone pigments medium-wave-sensitive 3 (human)" EXACT [UniProtKB:P0DN78]
xref: UniProtKB:P0DN78
is_a: PR:000050522 ! medium-wave-sensitive opsin (human)
intersection_of: PR:000050522 ! medium-wave-sensitive opsin (human)
intersection_of: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=51831 ! OPN1MW3 (human)
intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: has_gene_template http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=51831 ! OPN1MW3 (human)
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: PR:P10144
name: granzyme B (human)
Expand Down Expand Up @@ -27066,6 +27201,15 @@ comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=26952
name: OPN1MW2 (human)
namespace: gene
def: "A protein coding gene OPN1MW2 in human." [PRO:DNx]
comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=2770
name: DES (human)
Expand Down Expand Up @@ -27381,6 +27525,15 @@ comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=4206
name: OPN1MW (human)
namespace: gene
def: "A protein coding gene OPN1MW in human." [PRO:DNx]
comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=4232
name: GDNF (human)
Expand Down Expand Up @@ -27579,6 +27732,15 @@ comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=51831
name: OPN1MW3 (human)
namespace: gene
def: "A protein coding gene OPN1MW3 in human." [PRO:DNx]
comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=5273
name: HSPG2 (human)
Expand Down Expand Up @@ -28533,6 +28695,15 @@ comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=9936
name: OPN1LW (human)
namespace: gene
def: "A protein coding gene OPN1LW in human." [PRO:DNx]
comment: Category=external.
is_a: SO:0001217 ! protein_coding_gene
relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens

[Term]
id: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=9957
name: RELN (human)
Expand Down
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