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define idspace for NIF_Subcellular
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With new OWL API 4.5.29 we can now define idspaces for NIF_Subcellular.
Its terms were mistakenly changed to the OBO namespace when using
Protégé 5.6.5. This commit fixes that.
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anitacaron committed Jun 25, 2024
1 parent 439cf54 commit 3947dfe
Showing 1 changed file with 11 additions and 10 deletions.
21 changes: 11 additions & 10 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,7 @@ synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
synonymtypedef: SENSU "taxonomic disambiguation"
synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns"
default-namespace: uberon
idspace: NIF_Subcellular http://www.neurolex.org/wiki/
treat-xrefs-as-equivalent: AEO
treat-xrefs-as-equivalent: BILA
treat-xrefs-as-equivalent: BSPO
Expand Down Expand Up @@ -7007,8 +7008,8 @@ consider: FBbt:00007012
consider: FMA:86454
consider: GO:0044464
consider: HAO:0000014
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-1337158144
consider: NCIT:C34070
consider: NIF_Subcellular:sao-1337158144
consider: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA
consider: TGMA:0001834
consider: UMLS:C1178969 {source="ncithesaurus:Cell_Part"}
Expand Down Expand Up @@ -11048,7 +11049,7 @@ is_obsolete: true
consider: FBbt:00005107
consider: FMA:67301
consider: GO:0043025
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1044911821
consider: NIF_Subcellular:sao1044911821

[Term]
id: UBERON:0001023
Expand All @@ -11063,9 +11064,9 @@ consider: FBbt:00005110
consider: FMA:67314
consider: GAID:749
consider: GO:0030425
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1211023249
consider: MESH:A08.663.256
consider: NCIT:C32447
consider: NIF_Subcellular:sao1211023249
consider: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA
consider: TGMA:0001373
consider: UMLS:C0011305
Expand All @@ -11082,8 +11083,8 @@ consider: FBbt:00005113
consider: FMA:61814
consider: GAID:751
consider: GO:0043005
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-867568886
consider: MESH:A08.663.256.500
consider: NIF_Subcellular:sao-867568886

[Term]
id: UBERON:0001025
Expand All @@ -11099,9 +11100,9 @@ consider: FBbt:00005114
consider: FMA:67408
consider: GAID:766
consider: GO:0045202
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao914572699
consider: MESH:A08.850
consider: NCIT:C13281
consider: NIF_Subcellular:sao914572699
consider: SCTID:362298009
consider: UMLS:C0039062

Expand Down Expand Up @@ -11161,8 +11162,8 @@ replaced_by: GO:0031594
consider: FBbt:00005142
consider: FMA:61803
consider: GAID:809
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1124888485
consider: MESH:D009469
consider: NIF_Subcellular:sao1124888485

[Term]
id: UBERON:0001030
Expand All @@ -11172,7 +11173,7 @@ is_obsolete: true
consider: FBbt:00005143
consider: FMA:67107
consider: GO:0048788
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1884931180
consider: NIF_Subcellular:sao1884931180

[Term]
id: UBERON:0001031
Expand Down Expand Up @@ -63902,8 +63903,8 @@ is_obsolete: true
replaced_by: GO:0005883
consider: BIRNLEX:846
consider: FMA:63859
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1316272517
consider: NCIT:C13263
consider: NIF_Subcellular:sao1316272517
consider: UMLS:C0027834

[Term]
Expand Down Expand Up @@ -64187,9 +64188,9 @@ replaced_by: GO:0005882
consider: BIRNLEX:879
consider: FMA:63851
consider: GAID:1079
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao952483289
consider: MESH:A11.284.195.190.750.410
consider: NCIT:C13248
consider: NIF_Subcellular:sao952483289
consider: UMLS:C0021770

[Term]
Expand Down Expand Up @@ -64241,9 +64242,9 @@ is_obsolete: true
consider: FMA:63850
consider: GAID:1080
consider: GO:0005884
consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao2006047981
consider: MESH:A11.284.195.190.750.510
consider: NCIT:C13255
consider: NIF_Subcellular:sao2006047981
consider: UMLS:C0025979 {source="ncithesaurus:Actin_Filament"}

[Term]
Expand Down

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