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Merge pull request #3127 from obophenotype/switch-fma-bridge-to-offic…
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…ial-purls

Use official PURLs for the FMA bridge.
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gouttegd authored Jan 30, 2024
2 parents 91d201b + 3ee703b commit 78d8c18
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Showing 2 changed files with 3 additions and 1 deletion.
2 changes: 1 addition & 1 deletion src/ontology/bridge/bridges.rules.m4
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ prefix EHDAA2: <http://purl.obolibrary.org/obo/EHDAA2_>
prefix EMAPA: <http://purl.obolibrary.org/obo/EMAPA_>
prefix FBbt: <http://purl.obolibrary.org/obo/FBbt_>
prefix FBdv: <http://purl.obolibrary.org/obo/FBdv_>
prefix FMA: <http://purl.obolibrary.org/obo/FMA_>
prefix FMA: <http://purl.org/sig/ont/fma/fma>
prefix GO: <http://purl.obolibrary.org/obo/GO_>
prefix HAO: <http://purl.obolibrary.org/obo/HAO_>
prefix HBA: <https://purl.brain-bican.org/ontology/hbao/HBA_>
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2 changes: 2 additions & 0 deletions src/ontology/uberon.Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -1321,6 +1321,7 @@ mappings/cl-mappings.sssom.tsv: $(SRC) $(IMPORTDIR)/local-cl.owl $(TMPDIR)/plugi
--set-id "$(ONTBASE)/mappings/cl-mappings.sssom.tsv" \
--prefix 'KUPO: http://purl.obolibrary.org/obo/KUPO_' \
--prefix 'SCTID: http://purl.obolibrary.org/obo/SCTID_' \
--prefix 'FMA: http://purl.org/sig/ont/fma/fma' \
> $(REPORTDIR)/cl-xrefs-extraction.txt

# Likewise, the ZFA set (which is the source of truth for the CL-ZFA
Expand Down Expand Up @@ -1358,6 +1359,7 @@ $(TMPDIR)/uberon-mappings.sssom.tsv: $(SRC) $(TMPDIR)/plugins/sssom.jar
--prefix 'OGES: http://purl.obolibrary.org/obo/OGES_' \
--prefix 'PBA: https://purl.brain-bican.org/ontology/pbao/PBA_' \
--prefix 'SCTID: http://purl.obolibrary.org/obo/SCTID_' \
--prefix 'FMA: http://purl.org/sig/ont/fma/fma' \
> $(REPORTDIR)/uberon-xrefs-extraction.txt

# 2. Prepare the ruleset file.
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