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Re-serialise edit file.
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The -edit file contained some weirdly formatted line with trailing
spaces, some tags improperly ordered, and some incorrectly formatted
xrefs (possibly the result of some manual editing with a text editor?),
so we re-serialize it.
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@gouttegd
gouttegd committed Dec 24, 2024
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Showing 1 changed file with 24 additions and 24 deletions.
48 changes: 24 additions & 24 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -63168,7 +63168,7 @@ intersection_of: UBERON:0004130 ! cerebellar layer
intersection_of: in_deep_part_of UBERON:0002129 ! cerebellar cortex
relationship: has_part CL:0000119 ! cerebellar Golgi cell
relationship: has_part CL:0001031 ! cerebellar granule cell
relationship: has_part CL:4023161
relationship: has_part CL:4023161 ! unipolar brush cell
relationship: mutually_spatially_disjoint_with UBERON:0002979 {source="ABA"} ! Purkinje cell layer of cerebellar cortex

[Term]
Expand Down Expand Up @@ -219789,9 +219789,9 @@ def: "A group of small, interconnected ganglia situated posterior to and between
synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704]
synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704]
is_a: UBERON:0011216 ! organ system subdivision
is_a: UBERON:8910000 ! stomatogastric nervous system
relationship: in_taxon NCBITaxon:6656 ! Arthropoda
relationship: part_of UBERON:0001017 ! central nervous system
is_a: UBERON:8910000 ! stomatogastric nervous system

[Term]
id: UBERON:6005168
Expand Down Expand Up @@ -224760,65 +224760,65 @@ property_value: dcterms-date "2024-06-12T13:51:05Z" xsd:string
[Term]
id: UBERON:8910000
name: stomatogastric nervous system
def: "The part of the nervous system that controls the stomach, such as in crabs, lobsters, and flies" [FlyBase:FBrf0089570, PMID:12966498, PMID:27450880, DOI:10.1016/B0-12-370878-8/00177-4]
def: "The part of the nervous system that controls the stomach, such as in crabs, lobsters, and flies" [DOI:10.1016/B0-12-370878-8/00177-4, FlyBase:FBrf0089570, PMID:12966498, PMID:27450880]
is_a: UBERON:0011216 ! organ system subdivision
relationship: in_taxon NCBITaxon:6656 ! Arthropoda
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6656 ! Arthropoda

[Term]
id: UBERON:8910001
name: stomatogastric ganglion
def: "The stomatogastric ganglion (STG) consists of about 30 neurons that form two central pattern generator circuits in crustaceans. STG neurons have large soma (~50-100 um) and have complex branches. The STG contains the motor neurons that innervate the striated muscles that move the gastric mill and pyloric regions of the stomach." [PMID: 17009928]
synonym: "STG" EXACT [PMID: 17009928]
def: "The stomatogastric ganglion (STG) consists of about 30 neurons that form two central pattern generator circuits in crustaceans. STG neurons have large soma (~50-100 um) and have complex branches. The STG contains the motor neurons that innervate the striated muscles that move the gastric mill and pyloric regions of the stomach." [PMID:17009928]
synonym: "STG" EXACT [PMID:17009928]
is_a: UBERON:0011216 ! organ system subdivision
relationship: part_of UBERON:8910000 ! stomatogastric nervous system
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910000 ! stomatogastric nervous system

[Term]
id: UBERON:8910010
name: stomatogastric nerve (sensu Cancer borealis)
def: "The stomatogastric nerve (SGN) is made up of four separate nerves that emerge from the paired commissural ganglia, the superior and inferior esophageal nerves (SONs and IONs)." [DOI:10.1016/B0-12-370878-8/00177-4]
synonym: "SGN (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4]
is_a: UBERON:0035014 ! functional part of brain
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910000 ! stomatogastric nervous system

[Term]
id: UBERON:8910011
name: dorsal gastric nerve (sensu Cancer borealis)
def: "Nerve carrying dorsal gastric (DG) neurons which control the medial tooth movements in crustaceans." [PMID: 17009928]
def: "Nerve carrying dorsal gastric (DG) neurons which control the medial tooth movements in crustaceans." [PMID:17009928]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910000 ! stomatogastric nervous system
relationship: overlaps UBERON:8910001 ! stomatogastric ganglion
relationship: part_of UBERON:8910000 ! stomatogastric nervous system

[Term]
id: UBERON:8910012
name: gastropyloric nerve (sensu Cancer borealis)
def: "Consists of gastropyloric receptor (GPR) neurons, which are stretch receptors that innervate stomach muscles in crustaceans." [PMID: 17009928, PMID: 26888106]
def: "Consists of gastropyloric receptor (GPR) neurons, which are stretch receptors that innervate stomach muscles in crustaceans." [PMID:17009928, PMID:26888106]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910000 ! stomatogastric nervous system
relationship: overlaps UBERON:8910001 ! stomatogastric ganglion
relationship: part_of UBERON:8910000 ! stomatogastric nervous system

[Term]
id: UBERON:8910013
name: lateral gastric nerve (sensu Cancer borealis)
def: "Consists of lateral gastric (LG) neurons. The alternation between the lateral gastric neurons/medial gastric neurons and the lateral posterior gastric neurons control the movements of the lateral teeth in crustaceans." [PMID: 17009928]
def: "Consists of lateral gastric (LG) neurons. The alternation between the lateral gastric neurons/medial gastric neurons and the lateral posterior gastric neurons control the movements of the lateral teeth in crustaceans." [PMID:17009928]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910000 ! stomatogastric nervous system
relationship: overlaps UBERON:8910001 ! stomatogastric ganglion
relationship: part_of UBERON:8910000 ! stomatogastric nervous system

[Term]
id: UBERON:8910014
name: lateral ventricular nerve (sensu Cancer borealis)
def: "The motor axons that project into the dorsal ventricular nerve bifurcate and then project into both lateral ventricular nerves." [PMID: 10561445]
def: "The motor axons that project into the dorsal ventricular nerve bifurcate and then project into both lateral ventricular nerves." [PMID:10561445]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
Expand All @@ -224827,7 +224827,7 @@ relationship: part_of UBERON:8910000 ! stomatogastric nervous system
[Term]
id: UBERON:8910015
name: pyloric nerve (sensu Cancer borealis)
def: "Innervates pyloric region of the stomach." [PMID: 2876096]
def: "Innervates pyloric region of the stomach." [PMID:2876096]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
Expand All @@ -224836,7 +224836,7 @@ relationship: part_of UBERON:8910000 ! stomatogastric nervous system
[Term]
id: UBERON:8910016
name: pyloric dilator nerve (sensu Cancer borealis)
def: "Innervates muscles that dilate valves of the pylorus motor neurons involved in filtering in crustaceans. Anterior burster neurons are intrinsic oscillators that are electrically coupled with pyloric dilator neurons, causing them to fire bursts of action potentials. Together these neurons inhibit lateral pyloric and pyloric neurons, forcing them to fire in alternation with the pyloric dilator neurons." [PMID: 2876096, PMID: 17009928]
def: "Innervates muscles that dilate valves of the pylorus motor neurons involved in filtering in crustaceans. Anterior burster neurons are intrinsic oscillators that are electrically coupled with pyloric dilator neurons, causing them to fire bursts of action potentials. Together these neurons inhibit lateral pyloric and pyloric neurons, forcing them to fire in alternation with the pyloric dilator neurons." [PMID:17009928, PMID:2876096]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
Expand All @@ -224845,22 +224845,22 @@ relationship: part_of UBERON:8910000 ! stomatogastric nervous system
[Term]
id: UBERON:8910017
name: inferior esophageal nerve (sensu Cancer borealis)
synonym: "ION (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4]
def: "The inferior esophageal nerve (ION) is one of the four nerves that make up the stomatogastric nerve (SGN)." [DOI:10.1016/B0-12-370878-8/00177-4]
synonym: "ION (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910010 ! stomatogastric nerve
relationship: part_of UBERON:8910010 ! stomatogastric nerve (sensu Cancer borealis)

[Term]
id: UBERON:8910018
name: superior esophageal nerve (sensu Cancer borealis)
synonym: "SON (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4]
def: "The superior esophageal nerve (SON) is one of the four nerves that make up the stomatogastric nerve (SGN)." [DOI:10.1016/B0-12-370878-8/00177-4]
synonym: "SON (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910010 ! stomatogastric nerve
relationship: part_of UBERON:8910010 ! stomatogastric nerve (sensu Cancer borealis)

[Term]
id: UBERON:8910019
Expand All @@ -224869,7 +224869,7 @@ def: "innervates the foregut and midgut" [DOI:10.1016/B0-12-370878-8/00177-4]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
relationship: part_of UBERON:8910010 ! stomatogastric nerve
relationship: part_of UBERON:8910010 ! stomatogastric nerve (sensu Cancer borealis)

[Term]
id: UBERON:8910020
Expand All @@ -224883,8 +224883,8 @@ relationship: part_of UBERON:8910000 ! stomatogastric nervous system
[Term]
id: UBERON:8910021
name: commissural ganglion (sensu Cancer borealis)
synonym: "CG (sensu Cancer borealis)" EXACT [DOI:10.1016/b978-0-12-809324-5.21166-8]
def: "Contains motor fibers that innervate the esophagus. Stimulating the pyloric suppressor neuron alters both pyloric and gastric rhythms but also elicits activity in a third oscillatory circuit located in the commissural ganglia called the esophageal rhythm." [DOI:10.1016/b978-0-12-809324-5.21166-8]
synonym: "CG (sensu Cancer borealis)" EXACT [DOI:10.1016/b978-0-12-809324-5.21166-8]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
Expand All @@ -224902,8 +224902,8 @@ relationship: part_of UBERON:8910000 ! stomatogastric nervous system
[Term]
id: UBERON:8910023
name: median ventricular nerve (sensu Cancer borealis)
synonym: "MVN (sensu Cancer borealis)" EXACT [DOI:10.1016/0010-406X(70)90044-7]
def: "Most of the efferent fibers leaving the stomatogastric ganglion and leading to the gastric mill or pyloric stomach muscles run posteriorly in the dorsal median ventricular nerve. This nerve branches bilaterally into the right and left lateral ventricular nerves (LVN) which go to their respective sides of the stomach." [DOI:10.1016/0010-406X(70)90044-7]
synonym: "MVN (sensu Cancer borealis)" EXACT [DOI:10.1016/0010-406X(70)90044-7]
is_a: UBERON:0035014 ! functional part of brain
relationship: dc-contributor https://orcid.org/0000-0002-1909-7004
relationship: in_taxon NCBITaxon:6692 ! Pleocyemata
Expand Down

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