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Remove injections about RO:has_skeleton. #3416

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In RO, 'has skeleton' (RO:0002551) is domain-restricted to 'anatomical structure' (UBERON:0000061) and range-restricted to 'material anatomical entity' (UBERON:0000465).

Currently, in Uberon we are overriding those restrictions by injecting tigher constraints: a domain restriction to 'organism subdivision' (UBERON:0000475) and a range restriction to 'subdivision of skeleton' (UBERON:0010912).

A ticket to upstream those tighter restrictions to RO has gone nowhere in more than one year
(oborel/obo-relations#700).

This PR removes the Uberon-injected restrictions and leaves it to RO to decide whether they should adopt them or not.

Of note, the only inferred axiom that those tighter restrictions give us is this one:

'nose' SubClassOf: 'organism subdivision'

So we don't lose much by removing them until they are (maybe) added back directly by RO.

Related to #2453

In RO, 'has skeleton' (RO:0002551) is domain-restricted to 'anatomical
structure' (UBERON:0000061) and range-restricted to 'material anatomical
entity' (UBERON:0000465).

Currently, in Uberon we are overriding those restrictions by injecting
tigher constraints: a domain restriction to 'organism subdivision'
(UBERON:0000475) and a range restriction to 'subdivision of skeleton'
(UBERON:0010912).

A ticket to upstream those tighter restrictions to RO has gone nowhere
in more than one year
(oborel/obo-relations#700).

This PR removes the Uberon-injected restrictions and leaves it to RO to
decide whether they should adopt them or not.

Of note, the only inferred axiom that those tighter restrictions give us
is this one:

> 'nose' SubClassOf: 'organism subdivision'

So we don't lose much by removing them until they are (maybe) added back
directly by RO.

Related to #2453
@gouttegd gouttegd requested a review from anitacaron as a code owner November 11, 2024 17:26
@gouttegd gouttegd self-assigned this Nov 11, 2024
@gouttegd gouttegd requested review from cmungall and dosumis November 11, 2024 17:49
@anitacaron anitacaron removed their request for review November 13, 2024 17:03
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This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

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