2024-04-24 Release (#795)

* 2024-04-04 release

* update orcidio import

* update release artefacts

* update orcidio import

* update release artefacts after merge

* release 2024-04-24

---------

Co-authored-by: Anita Caron <[email protected]>

core.json

@@ -7,12 +7,12 @@
         "val" : "https://creativecommons.org/publicdomain/zero/1.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2024-02-13"
+        "val" : "2024-04-24"
       }, {
         "pred" : "http://xmlns.com/foaf/0.1/homepage",
         "val" : "https://github.com/oborel/obo-relations/wiki/ROCore"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/ro/releases/2024-02-13/core.json"
+      "version" : "http://purl.obolibrary.org/obo/ro/releases/2024-04-24/core.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/BFO_0000002",

core.obo

@@ -1,9 +1,9 @@
 format-version: 1.2
-data-version: ro/releases/2024-02-13/core.owl
+data-version: ro/releases/2024-04-24/core.owl
 ontology: ro/core
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
 property_value: http://xmlns.com/foaf/0.1/homepage "https://github.com/oborel/obo-relations/wiki/ROCore" xsd:anyURI
-property_value: owl:versionInfo "2024-02-13" xsd:string
+property_value: owl:versionInfo "2024-04-24" xsd:string
 
 [Term]
 id: BFO:0000002

core.owl

@@ -13,9 +13,9 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro/core.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2024-02-13/core.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2024-04-24/core.owl"/>
         <terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
-        <owl:versionInfo>2024-02-13</owl:versionInfo>
+        <owl:versionInfo>2024-04-24</owl:versionInfo>
         <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/ROCore</foaf:homepage>
     </owl:Ontology>
 

src/ontology/imports/orcidio_import.owl

@@ -7,12 +7,13 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/ro/imports/orcidio_import.owl>
-<http://purl.obolibrary.org/obo/ro/releases/2024-02-12/imports/orcidio_import.owl>
-Annotation(owl:versionInfo "2024-02-12")
+<http://purl.obolibrary.org/obo/ro/releases/2024-04-04/imports/orcidio_import.owl>
+Annotation(owl:versionInfo "2024-04-04")
 
 Declaration(NamedIndividual(<https://orcid.org/0000-0001-6677-8489>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0001-6996-0040>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0001-7258-9596>))
+Declaration(NamedIndividual(<https://orcid.org/0000-0001-8314-2140>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0001-8910-9851>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0001-9625-1899>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0002-2908-3327>))
@@ -24,12 +25,13 @@ Declaration(NamedIndividual(<https://orcid.org/0000-0002-7073-9172>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0002-7463-6306>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0002-8461-9745>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0002-8688-6599>))
+Declaration(NamedIndividual(<https://orcid.org/0000-0002-8844-9165>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0003-1617-8244>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0003-1813-6857>))
-
 Declaration(NamedIndividual(<https://orcid.org/0000-0003-1834-3856>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0003-1909-9269>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0003-1940-6740>))
+Declaration(NamedIndividual(<https://orcid.org/0000-0003-2620-0345>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0003-3138-4118>))
 Declaration(NamedIndividual(<https://orcid.org/0000-0003-4423-4370>))
 Declaration(AnnotationProperty(<http://purl.org/dc/terms/creator>))
@@ -58,6 +60,11 @@ AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wik
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q57023310>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0001-7258-9596> "researcher")
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q57023310>) rdfs:label <https://orcid.org/0000-0001-7258-9596> "Shawn Zheng Kai Tan")
 
+# Individual: <https://orcid.org/0000-0001-8314-2140> (Raymund Stefancsik)
+
+AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q52097457>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0001-8314-2140> "researcher")
+AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q52097457>) rdfs:label <https://orcid.org/0000-0001-8314-2140> "Raymund Stefancsik")
+
 # Individual: <https://orcid.org/0000-0001-8910-9851> (Lynn Schriml)
 
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q28913673>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0001-8910-9851> "researcher, metadata, diseases, University of Maryland")
@@ -113,6 +120,11 @@ AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wik
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q37649212>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0002-8688-6599> "researcher")
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q37649212>) rdfs:label <https://orcid.org/0000-0002-8688-6599> "James P. Balhoff")
 
+# Individual: <https://orcid.org/0000-0002-8844-9165> (Damion M Dooley)
+
+AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q91868864>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0002-8844-9165> "researcher (ORCID 0000-0002-8844-9165)")
+AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q91868864>) rdfs:label <https://orcid.org/0000-0002-8844-9165> "Damion M Dooley")
+
 # Individual: <https://orcid.org/0000-0003-1617-8244> (Lindsay G Cowell)
 
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q89259560>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-1617-8244> "researcher")
@@ -123,11 +135,11 @@ AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wik
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q30032484>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-1813-6857> "Canadian biocurator")
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q30032484>) rdfs:label <https://orcid.org/0000-0003-1813-6857> "Pascale Gaudet")
 
-
 # Individual: <https://orcid.org/0000-0003-1834-3856> (Mathias Brochhausen)
 
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q57161944>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-1834-3856> "researcher")
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q57161944>) rdfs:label <https://orcid.org/0000-0003-1834-3856> "Mathias Brochhausen")
+
 # Individual: <https://orcid.org/0000-0003-1909-9269> (S. Clint Dowland)
 
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q123250399>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-1909-9269> "Researcher ORCID=0000-0003-1909-9269")
@@ -138,6 +150,11 @@ AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wik
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q37377046>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-1940-6740> "researcher")
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q37377046>) rdfs:label <https://orcid.org/0000-0003-1940-6740> "Anna Maria Masci")
 
+# Individual: <https://orcid.org/0000-0003-2620-0345> (Asiyah Yu Lin)
+
+AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q123250403>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-2620-0345> "Researcher ORCID=0000-0003-2620-0345")
+AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q123250403>) rdfs:label <https://orcid.org/0000-0003-2620-0345> "Asiyah Yu Lin")
+
 # Individual: <https://orcid.org/0000-0003-3138-4118> (Jorrit Poelen)
 
 AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q58206618>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-3138-4118> "software/data engineer")

src/ontology/subsets/ro-biotic-interaction.json

@@ -222,6 +222,9 @@
       "lbl" : "parasite of",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "A parasite-host relationship where an organism benefits at the expense of another."
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "synonyms" : [ {
           "pred" : "hasExactSynonym",
@@ -246,6 +249,9 @@
       "lbl" : "parasitized by",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "Inverse of parasite of"
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "synonyms" : [ {
           "pred" : "hasExactSynonym",
@@ -368,6 +374,9 @@
       "lbl" : "acquires nutrients from",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "Inverse of provides nutrients for"
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
@@ -436,6 +445,9 @@
       "lbl" : "provides nutrients for",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "A biotic interaction where a material entity provides nutrition for an organism."
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
@@ -447,6 +459,9 @@
       "lbl" : "eats",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "A biotic interaction where one organism consumes a material entity through a type of mouth or other oral opening."
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
@@ -461,6 +476,9 @@
       "lbl" : "is eaten by",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "Inverse of eats"
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
@@ -552,6 +570,9 @@
       "lbl" : "pathogen of",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "Inverse of has pathogen"
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
@@ -563,6 +584,9 @@
       "lbl" : "has pathogen",
       "type" : "PROPERTY",
       "meta" : {
+        "definition" : {
+          "val" : "A host interaction where the smaller of the two members of a symbiosis causes a disease in the larger member"
+        },
         "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
@@ -929,7 +953,7 @@
     }, {
       "sub" : "http://purl.obolibrary.org/obo/RO_0002457",
       "pred" : "subPropertyOf",
-      "obj" : "http://purl.obolibrary.org/obo/RO_0002438"
+      "obj" : "http://purl.obolibrary.org/obo/RO_0002437"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/RO_0002458",
       "pred" : "subPropertyOf",
@@ -945,15 +969,15 @@
     }, {
       "sub" : "http://purl.obolibrary.org/obo/RO_0002469",
       "pred" : "subPropertyOf",
-      "obj" : "http://purl.obolibrary.org/obo/RO_0002438"
+      "obj" : "http://purl.obolibrary.org/obo/RO_0002437"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/RO_0002470",
       "pred" : "subPropertyOf",
-      "obj" : "http://purl.obolibrary.org/obo/RO_0002438"
+      "obj" : "http://purl.obolibrary.org/obo/RO_0002437"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/RO_0002471",
       "pred" : "subPropertyOf",
-      "obj" : "http://purl.obolibrary.org/obo/RO_0002438"
+      "obj" : "http://purl.obolibrary.org/obo/RO_0002437"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/RO_0002553",
       "pred" : "subPropertyOf",

src/ontology/subsets/ro-biotic-interaction.obo

@@ -124,6 +124,7 @@ is_a: RO:0002440 ! symbiotically interacts with
 [Typedef]
 id: RO:0002444
 name: parasite of
+def: "A parasite-host relationship where an organism benefits at the expense of another." []
 subset: ro-eco
 synonym: "direct parasite of" EXACT []
 property_value: IAO:0000112 "Pediculus humanus capitis parasite of human" xsd:string
@@ -137,6 +138,7 @@ inverse_of: RO:0002445 ! parasitized by
 [Typedef]
 id: RO:0002445
 name: parasitized by
+def: "Inverse of parasite of" []
 subset: ro-eco
 synonym: "directly parasitized by" EXACT []
 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
@@ -199,10 +201,11 @@ is_a: RO:0002442 ! mutualistically interacts with
 [Typedef]
 id: RO:0002457
 name: acquires nutrients from
+def: "Inverse of provides nutrients for" []
 subset: ro-eco
 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
 property_value: IAO:0000232 "Intended to be used when the target of the relation is not itself consumed, and does not have integral parts consumed, but provided nutrients in some other fashion." xsd:string
-is_a: RO:0002438 ! trophically interacts with
+is_a: RO:0002437 ! biotically interacts with
 inverse_of: RO:0002469 ! provides nutrients for
 
 [Typedef]
@@ -238,26 +241,29 @@ is_a: RO:0002574 ! participates in a biotic-biotic interaction with
 [Typedef]
 id: RO:0002469
 name: provides nutrients for
+def: "A biotic interaction where a material entity provides nutrition for an organism." []
 subset: ro-eco
 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
-is_a: RO:0002438 ! trophically interacts with
+is_a: RO:0002437 ! biotically interacts with
 
 [Typedef]
 id: RO:0002470
 name: eats
+def: "A biotic interaction where one organism consumes a material entity through a type of mouth or other oral opening." []
 subset: ro-eco
 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
 property_value: IAO:0000118 "is subject of eating interaction with" xsd:string
-is_a: RO:0002438 ! trophically interacts with
+is_a: RO:0002437 ! biotically interacts with
 
 [Typedef]
 id: RO:0002471
 name: is eaten by
+def: "Inverse of eats" []
 subset: ro-eco
 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
 property_value: IAO:0000118 "eaten by" xsd:string
 property_value: IAO:0000118 "is target of eating interaction with" xsd:string
-is_a: RO:0002438 ! trophically interacts with
+is_a: RO:0002437 ! biotically interacts with
 
 [Typedef]
 id: RO:0002553
@@ -300,6 +306,7 @@ is_a: RO:0002574 ! participates in a biotic-biotic interaction with
 [Typedef]
 id: RO:0002556
 name: pathogen of
+def: "Inverse of has pathogen" []
 subset: ro-eco
 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
 is_a: RO:0002454 ! has host
@@ -308,6 +315,7 @@ inverse_of: RO:0002557 ! has pathogen
 [Typedef]
 id: RO:0002557
 name: has pathogen
+def: "A host interaction where the smaller of the two members of a symbiosis causes a disease in the larger member" []
 subset: ro-eco
 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
 is_a: RO:0002453 ! host of