Merge pull request #291 from oborel/has-input-refactor

WIP: Has input refactor

src/ontology/ro-edit.owl

@@ -456,6 +456,9 @@ Declaration(ObjectProperty(obo:RO_0004003))
 Declaration(ObjectProperty(obo:RO_0004004))
 Declaration(ObjectProperty(obo:RO_0004005))
 Declaration(ObjectProperty(obo:RO_0004006))
+Declaration(ObjectProperty(obo:RO_0004007))
+Declaration(ObjectProperty(obo:RO_0004008))
+Declaration(ObjectProperty(obo:RO_0004009))
 Declaration(ObjectProperty(obo:RO_0004010))
 Declaration(ObjectProperty(obo:RO_0004011))
 Declaration(ObjectProperty(obo:RO_0004012))
@@ -2218,7 +2221,7 @@ AnnotationAssertion(rdfs:label obo:RO_0002217 "actively participates in"@en)
 SubObjectPropertyOf(obo:RO_0002217 obo:RO_0000056)
 InverseObjectProperties(obo:RO_0002217 obo:RO_0002218)
 
-# Object Property: obo:RO_0002218 (has active participant)
+# Object Property: obo:RO_0002218 (obsolete has active participant)
 
 AnnotationAssertion(obo:IAO_0000112 obo:RO_0002218 "'heart development' has active participant some Shh protein")
 AnnotationAssertion(obo:IAO_0000114 obo:RO_0002218 obo:IAO_0000125)
@@ -2227,7 +2230,8 @@ AnnotationAssertion(obo:IAO_0000116 obo:RO_0002218 "This may be obsoleted and re
 AnnotationAssertion(obo:IAO_0000117 obo:RO_0002218 "Chris Mungall")
 AnnotationAssertion(obo:IAO_0000118 obo:RO_0002218 "has agent")
 AnnotationAssertion(oboInOwl:inSubset obo:RO_0002218 subsets:ro-eco)
-AnnotationAssertion(rdfs:label obo:RO_0002218 "has active participant"@en)
+AnnotationAssertion(rdfs:label obo:RO_0002218 "obsolete has active participant"^^xsd:string)
+AnnotationAssertion(owl:deprecated obo:RO_0002218 "true"^^xsd:boolean)
 SubObjectPropertyOf(obo:RO_0002218 obo:RO_0000057)
 
 # Object Property: obo:RO_0002219 (surrounded by)
@@ -2923,6 +2927,7 @@ SubObjectPropertyOf(obo:RO_0002332 obo:RO_0002328)
 AnnotationAssertion(obo:IAO_0000115 obo:RO_0002333 "inverse of enables")
 AnnotationAssertion(obo:IAO_0000117 obo:RO_0002333 "Chris Mungall")
 AnnotationAssertion(rdfs:label obo:RO_0002333 "enabled by"@en)
+SubObjectPropertyOf(obo:RO_0002333 obo:RO_0000057)
 SubObjectPropertyOf(obo:RO_0002333 obo:RO_0002328)
 
 # Object Property: obo:RO_0002334 (regulated by)
@@ -5149,6 +5154,32 @@ AnnotationAssertion(rdfs:label obo:RO_0004006 "has partial material basis in ger
 SubObjectPropertyOf(obo:RO_0004006 obo:RO_0004000)
 InverseObjectProperties(obo:RO_0004006 obo:RO_0004016)
 
+# Object Property: obo:RO_0004007 (has primary input or output)
+
+AnnotationAssertion(obo:IAO_0000115 obo:RO_0004007 "p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c.")
+AnnotationAssertion(oboInOwl:created_by obo:RO_0004007 "cjm"^^xsd:string)
+AnnotationAssertion(oboInOwl:creation_date obo:RO_0004007 "2018-12-13T11:26:17Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label obo:RO_0004007 "has primary input or output")
+SubObjectPropertyOf(obo:RO_0004007 obo:RO_0000057)
+
+# Object Property: obo:RO_0004008 (has primary output)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cjm") Annotation(oboInOwl:hasDbXref "GOC:dph") Annotation(oboInOwl:hasDbXref "GOC:kva") Annotation(oboInOwl:hasDbXref "GOC:pt") Annotation(rdfs:comment "PMID:27812932") obo:IAO_0000115 obo:RO_0004008 "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c.")
+AnnotationAssertion(oboInOwl:created_by obo:RO_0004008 "cjm"^^xsd:string)
+AnnotationAssertion(oboInOwl:creation_date obo:RO_0004008 "2018-12-13T11:26:32Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label obo:RO_0004008 "has primary output")
+SubObjectPropertyOf(obo:RO_0004008 obo:RO_0002234)
+SubObjectPropertyOf(obo:RO_0004008 obo:RO_0004007)
+
+# Object Property: obo:RO_0004009 (has primary input)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cjm") Annotation(oboInOwl:hasDbXref "GOC:dph") Annotation(oboInOwl:hasDbXref "GOC:kva") Annotation(oboInOwl:hasDbXref "GOC:pt") Annotation(rdfs:comment "PMID:27812932") obo:IAO_0000115 obo:RO_0004009 "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c.")
+AnnotationAssertion(oboInOwl:created_by obo:RO_0004009 "cjm"^^xsd:string)
+AnnotationAssertion(oboInOwl:creation_date obo:RO_0004009 "2018-12-13T11:26:56Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label obo:RO_0004009 "has primary input")
+SubObjectPropertyOf(obo:RO_0004009 obo:RO_0002233)
+SubObjectPropertyOf(obo:RO_0004009 obo:RO_0004007)
+
 # Object Property: obo:RO_0004010 (is genetic basis for condition)
 
 AnnotationAssertion(obo:IAO_0000232 obo:RO_0004010 "Do not use this relation directly. It is intended as a grouping for a more specific relations")