2023-06-28 Release (#728)

* release * update release * fix xref chebi * update go links to use anyURI datatype * update release * release 2023-06-28 --------- Co-authored-by: Anita Caron <[email protected]>
oborel · Jul 3, 2023 · e637f01 · e637f01
1 parent 97a906a
commit e637f01
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diff --git a/core.json b/core.json
@@ -7,12 +7,12 @@
         "val" : "https://creativecommons.org/publicdomain/zero/1.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2023-02-22"
+        "val" : "2023-06-28"
       }, {
         "pred" : "http://xmlns.com/foaf/0.1/homepage",
         "val" : "https://github.com/oborel/obo-relations/wiki/ROCore"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/core.json"
+      "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-06-28/core.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/BFO_0000002",
@@ -38,8 +38,9 @@
       "type" : "CLASS",
       "meta" : {
         "definition" : {
-          "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."
-        }
+          "val" : "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"
+        },
+        "comments" : [ "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." ]
       }
     }, {
       "id" : "http://purl.obolibrary.org/obo/BFO_0000006",
@@ -51,8 +52,9 @@
       "type" : "CLASS",
       "meta" : {
         "definition" : {
-          "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."
-        }
+          "val" : "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"
+        },
+        "comments" : [ "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." ]
       }
     }, {
       "id" : "http://purl.obolibrary.org/obo/BFO_0000016",
@@ -77,8 +79,9 @@
       "type" : "CLASS",
       "meta" : {
         "definition" : {
-          "val" : "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."
-        }
+          "val" : "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"
+        },
+        "comments" : [ "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." ]
       }
     }, {
       "id" : "http://purl.obolibrary.org/obo/BFO_0000023",
@@ -95,8 +98,9 @@
       "type" : "CLASS",
       "meta" : {
         "definition" : {
-          "val" : "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."
-        }
+          "val" : "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"
+        },
+        "comments" : [ "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." ]
       }
     }, {
       "id" : "http://purl.obolibrary.org/obo/BFO_0000034",

diff --git a/core.obo b/core.obo
@@ -1,9 +1,9 @@
 format-version: 1.2
-data-version: ro/releases/2023-02-22/core.owl
+data-version: ro/releases/2023-06-28/core.owl
 ontology: ro/core
 property_value: http://purl.org/dc/elements/1.1/license https://creativecommons.org/publicdomain/zero/1.0/
 property_value: http://xmlns.com/foaf/0.1/homepage "https://github.com/oborel/obo-relations/wiki/ROCore" xsd:anyURI
-property_value: owl:versionInfo "2023-02-22" xsd:string
+property_value: owl:versionInfo "2023-06-28" xsd:string
 
 [Term]
 id: BFO:0000002
@@ -19,7 +19,8 @@ def: "An entity that has temporal parts and that happens, unfolds or develops th
 [Term]
 id: BFO:0000004
 name: independent continuant
-def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." []
+def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" []
+comment: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
 is_a: BFO:0000002 ! continuant
 disjoint_from: BFO:0000020 ! specifically dependent continuant
 disjoint_from: BFO:0000031 ! generically dependent continuant
@@ -32,7 +33,8 @@ is_a: BFO:0000141 ! immaterial entity
 [Term]
 id: BFO:0000015
 name: process
-def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." []
+def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" []
+comment: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
 is_a: BFO:0000003 ! occurrent
 
 [Term]
@@ -56,7 +58,8 @@ is_a: BFO:0000020 ! specifically dependent continuant
 [Term]
 id: BFO:0000020
 name: specifically dependent continuant
-def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." []
+def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" []
+comment: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
 is_a: BFO:0000002 ! continuant
 disjoint_from: BFO:0000031 ! generically dependent continuant
 
@@ -69,7 +72,8 @@ is_a: BFO:0000017 ! realizable entity
 [Term]
 id: BFO:0000031
 name: generically dependent continuant
-def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." []
+def: "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])" []
+comment: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
 is_a: BFO:0000002 ! continuant
 
 [Term]

diff --git a/core.owl b/core.owl
@@ -13,9 +13,9 @@
      xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
      xmlns:terms="http://purl.org/dc/terms/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro/core.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-02-22/core.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-06-28/core.owl"/>
         <dc:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
-        <owl:versionInfo>2023-02-22</owl:versionInfo>
+        <owl:versionInfo>2023-06-28</owl:versionInfo>
         <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/ROCore</foaf:homepage>
     </owl:Ontology>
 
@@ -682,7 +682,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
         <owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
         <owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
-        <obo:IAO_0000115 xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</obo:IAO_0000115>
+        <rdfs:comment xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</rdfs:comment>
         <rdfs:label xml:lang="en">independent continuant</rdfs:label>
     </owl:Class>
 
@@ -701,7 +702,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
-        <obo:IAO_0000115 xml:lang="en">An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])</obo:IAO_0000115>
+        <rdfs:comment xml:lang="en">An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.</rdfs:comment>
         <rdfs:label xml:lang="en">process</rdfs:label>
     </owl:Class>
 
@@ -742,7 +744,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000020">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
         <owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
-        <obo:IAO_0000115 xml:lang="en">A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">b is a specifically dependent continuant = Def. b is a continuant &amp; there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])</obo:IAO_0000115>
+        <rdfs:comment xml:lang="en">A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.</rdfs:comment>
         <rdfs:label xml:lang="en">specifically dependent continuant</rdfs:label>
     </owl:Class>
 
@@ -762,7 +765,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000031">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
-        <obo:IAO_0000115 xml:lang="en">A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])</obo:IAO_0000115>
+        <rdfs:comment xml:lang="en">A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.</rdfs:comment>
         <rdfs:label xml:lang="en">generically dependent continuant</rdfs:label>
     </owl:Class>