Remove specific dirs from flake8 & isort #340

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Run time

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Job	Run time
build (3.8)	1m 20s
build (3.8)	1m 20s
build (3.9)	1m 24s
build (3.9)	1s
build (3.10)	1m 32s
build (3.10)	1m 32s
	7m 9s