ENCODE_CRISPR_scripts

Previously, check_PAM.py required chromosome-wide fasta files as inputs (compatible with the UCSC hg38 chromosome files). Now, it requires a genome-wide fasta file to be compatible with the ENCODE genome reference file (https://www.encodeproject.org/files/GRCh38_no_alt_analysis_set_GCA_000001405.15/).

ENCODE_CRISPR_scripts

In check_PAM.py, skips all negative_control labeled guides for PAM checking.

ENCODE_CRISPR_scripts

Made a tiny change so that the check scripts safely ignore empty lines.

ENCODE_CRISPR_scripts

This release contains some useful scripts that can be used by the ENCODE FCC CRISPR subgroup.