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@ohsu-comp-bio

Oregon Health and Science University Computational Biology

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  1. funnel funnel Public

    Funnel is a toolkit for distributed task execution via a simple, standard API.

    Go 121 33

  2. tesseract tesseract Public

    Python lib for remote code execution via the GA4GH TES API

    Python 7

  3. g2p-aggregator g2p-aggregator Public

    Associations of genomic features, drugs and diseases

    HTML 48 11

Repositories

Showing 10 of 199 repositories
  • funnel-plugins Public

    Golang Plugin development + testing using the `go-plugin` package from Hashicorp

    ohsu-comp-bio/funnel-plugins’s past year of commit activity
    Go 1 Apache-2.0 0 0 0 Updated Dec 24, 2024
  • compbio-galaxy-wrappers Public

    OHSU Galaxy wrappers.

    ohsu-comp-bio/compbio-galaxy-wrappers’s past year of commit activity
    Python 6 11 0 1 Updated Dec 20, 2024
  • funnel Public

    Funnel is a toolkit for distributed task execution via a simple, standard API.

    ohsu-comp-bio/funnel’s past year of commit activity
    Go 121 MIT 33 106 (1 issue needs help) 6 Updated Dec 20, 2024
  • helm-charts Public

    Helm Charts for deploying various projects in Kubernetes!

    ohsu-comp-bio/helm-charts’s past year of commit activity
    0 0 0 0 Updated Dec 16, 2024
  • fence-multipart Public Forked from uc-cdis/fence

    AuthN/AuthZ OIDC Service

    ohsu-comp-bio/fence-multipart’s past year of commit activity
    Python 0 Apache-2.0 48 0 0 Updated Dec 9, 2024
  • py-tes Public

    Python SDK for the GA4GH Task Execution API

    ohsu-comp-bio/py-tes’s past year of commit activity
    Python 5 MIT 10 17 0 Updated Dec 9, 2024
  • awesome-tes Public

    A curated list of awesome GA4GH TES projects and programs

    ohsu-comp-bio/awesome-tes’s past year of commit activity
    1 CC0-1.0 0 1 0 Updated Dec 7, 2024
  • seqrepo-rest-service Public Forked from biocommons/seqrepo-rest-service

    OpenAPI-based REST interface to biological sequences and sequence metadata

    ohsu-comp-bio/seqrepo-rest-service’s past year of commit activity
    Python 0 Apache-2.0 6 0 0 Updated Nov 27, 2024
  • vrs-annotator Public

    Annotates VCF Variants with VRS IDs

    ohsu-comp-bio/vrs-annotator’s past year of commit activity
    Jupyter Notebook 1 3 0 0 Updated Nov 22, 2024
  • syntheVAEiser Public
    ohsu-comp-bio/syntheVAEiser’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Oct 18, 2024
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