You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
py-tes on pypi currently has 2 prereleases tagged as 1.1.0. It seems like some of the requests that py-tes calls aren't working though. With py-tes==1.1.0rc2 and Funnel 0.11.0, attempting to run toil-wdl-runner with the TES batchsystem plugin results in TES seeing an unexpected argument:
Traceback (most recent call last):
File "/home/heaucques/Documents/toil/venv3.12/lib/python3.12/site-packages/tes/utils.py", line 115, in unmarshal
output = o(**r)
^^^^^^
TypeError: Input.__init__() got an unexpected keyword argument 'streamable'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/heaucques/Documents/toil/venv3.12/bin/toil-wdl-runner", line 8, in <module>
sys.exit(main())
^^^^^^
File "/home/heaucques/Documents/toil/src/toil/wdl/wdltoil.py", line 141, in decorated
return decoratee(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil/src/toil/wdl/wdltoil.py", line 3156, in main
output_bindings = toil.start(root_job)
^^^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil/src/toil/common.py", line 930, in start
return self._runMainLoop(rootJobDescription)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil/src/toil/common.py", line 1414, in _runMainLoop
jobCache=self._jobCache).run()
^^^^^
File "/home/heaucques/Documents/toil/src/toil/leader.py", line 257, in run
self.innerLoop()
File "/home/heaucques/Documents/toil/src/toil/leader.py", line 782, in innerLoop
self.checkForDeadlocks()
File "/home/heaucques/Documents/toil/src/toil/leader.py", line 819, in checkForDeadlocks
totalRunningJobs = len(self.batchSystem.getRunningBatchJobIDs())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil_batch_system_tes/src/toil_batch_system_tes/tes_batch_system.py", line 412, in getRunningBatchJobIDs
task = self.tes.get_task(tes_id)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil/venv3.12/lib/python3.12/site-packages/tes/client.py", line 190, in get_task
return unmarshal(response.json(), Task)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil/venv3.12/lib/python3.12/site-packages/tes/utils.py", line 111, in unmarshal
field = _unmarshal(v, obj)
^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil/venv3.12/lib/python3.12/site-packages/tes/utils.py", line 100, in _unmarshal
field.append(unmarshal(item, obj))
^^^^^^^^^^^^^^^^^^^^
File "/home/heaucques/Documents/toil/venv3.12/lib/python3.12/site-packages/tes/utils.py", line 120, in unmarshal
raise UnmarshalError(msg)
tes.utils.UnmarshalError: {'description': '', 'name': '', 'path': '/root/.aws', 'streamable': False, 'type': 'DIRECTORY', 'url': 'file:///home/heaucques/.aws'} could not be unmarshalled to type: Input
TypeError: Input.__init__() got an unexpected keyword argument 'streamable'
A similar result happens with 1.1.0rc1, where the service_info() function tries to request at the wrong URL:
requests.exceptions.HTTPError: 500 Server Error: Internal Server Error for url: http://localhost:8000/v1/tasks/service-info
The text was updated successfully, but these errors were encountered:
py-tes
on pypi currently has 2 prereleases tagged as 1.1.0. It seems like some of the requests thatpy-tes
calls aren't working though. Withpy-tes==1.1.0rc2
and Funnel 0.11.0, attempting to runtoil-wdl-runner
with the TES batchsystem plugin results in TES seeing an unexpected argument:A similar result happens with
1.1.0rc1
, where theservice_info()
function tries to request at the wrong URL:The text was updated successfully, but these errors were encountered: