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This is based on #87 (comment) -
Rationale:
The import of ome.zarr files into OMERO based on #87 (comment) is not successful, as blosc is not installed and found.
See also ome/ZarrReader#76 (comment)
Adding blosc install as per this PR is fixing the issue of
stacktrace=java.lang.NoClassDefFoundError: Could not initialize class org.blosc.IBloscDll at com.bc.zarr.CompressorFactory$BloscCompressor.cbufferSizes(CompressorFactory.java:371
but a new issue emerges:New issue (specific to Docker (possibly) and Rockylinux-9 image (?):
Several points to discuss:
IndexOOBounds
error above connected with my Rockylinux-9 docker on M1 Mac setup ? Note that this problem is not encountered on RHEL 9 VM setup, where the install ofsudo dnf install blosc
fixes the ome.zarr import fully. How to fix the IndexOOB error on Docker ?cc @khaledk2 @jburel