Update news for v4.9 (#1021)

oncokb · Sep 29, 2023 · 6129810 · 6129810
1 parent 5a4553b
commit 6129810
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Showing 7 changed files with 93 additions and 12 deletions.
diff --git a/src/main/webapp/app/config/constants.tsx b/src/main/webapp/app/config/constants.tsx
@@ -783,6 +783,7 @@ export type DataRelease = {
 };
 
 export const DATA_RELEASES: DataRelease[] = [
+  { date: '10022023', version: 'v4.9' },
   { date: '09012023', version: 'v4.8' },
   { date: '07282023', version: 'v4.7' },
   { date: '07122023', version: 'v4.6' },

diff --git a/src/main/webapp/app/pages/newsPage/ChangedAnnotatonListItem.tsx b/src/main/webapp/app/pages/newsPage/ChangedAnnotatonListItem.tsx
@@ -48,7 +48,7 @@ export const ChangedAnnotationListItem = (props: {
       annotationColumnHeader = CHANGED_ANNOTATION_ADDITIONAL_DRUG_SAME_LEVEL_COLUMNS;
       useOneLineRowClass = false;
       defaultTitle =
-        'Updated therapeutic implications - addition of therapies for variants with a level of evidence';
+        'Updated therapeutic implications - Addition of therapies for variants with a level of evidence';
       break;
     case AnnotationColumnHeaderType.ADDITIONAL_DIFF_LEVEL_DRUG:
       annotationColumnHeader = CHANGED_ANNOTATION_ADDITIONAL_DRUG_DIFF_LEVEL_COLUMNS;

diff --git a/src/main/webapp/app/pages/newsPage/Links.tsx b/src/main/webapp/app/pages/newsPage/Links.tsx
@@ -13,6 +13,15 @@ export const FdaApprovalLink: React.FunctionComponent<{
   linkText += `of ${props.approval}`;
   return <Linkout link={props.link}>{linkText}</Linkout>;
 };
+export const FdaWithdrawalLink: React.FunctionComponent<{
+  linkText: string;
+}> = props => {
+  return (
+    <Linkout link="https://www.fda.gov/drugs/resources-information-approved-drugs/withdrawn-cancer-accelerated-approvals">
+      {props.linkText}
+    </Linkout>
+  );
+};
 export const FdaBreakthroughLink: React.FunctionComponent<{
   link: string;
 }> = props => {

diff --git a/src/main/webapp/app/pages/newsPage/NewsPage.tsx b/src/main/webapp/app/pages/newsPage/NewsPage.tsx
@@ -1,7 +1,11 @@
 import * as React from 'react';
 import { CitationText } from 'app/components/CitationText';
 import NewsList, { getNews, getNewsTitle } from 'app/pages/newsPage/NewsList';
-import { NEWS_BY_DATE } from 'app/pages/newsPage/NewsPageContent';
+import {
+  DRUGS_ADDED_TO_ONCOKB,
+  DRUGS_CURRENTLY_IN_ONCOKB,
+  NEWS_BY_DATE,
+} from 'app/pages/newsPage/NewsPageContent';
 import {
   FAQ_LINK,
   IMG_MAX_WIDTH,
@@ -85,6 +89,7 @@ export default class NewsPage extends React.Component<{
             <CitationText />
           </div>
           <div className="mt-2">
+            <NewsList date={'10022023'} />
             <NewsList date={'09012023'} />
             <NewsList date={'07282023'} />
             <NewsList date={'07122023'} />
@@ -171,8 +176,8 @@ export default class NewsPage extends React.Component<{
                                 <th>Mutation</th>
                                 <th>Cancer Type</th>
                                 <th>Current Level of Evidence</th>
-                                <th>Drug(s) Already in {ONCOKB_TM}</th>
-                                <th>Newly Added Drug(s)</th>
+                                <th>{DRUGS_CURRENTLY_IN_ONCOKB}</th>
+                                <th>{DRUGS_ADDED_TO_ONCOKB}</th>
                                 <th>Evidence</th>
                               </tr>
                             </thead>

diff --git a/src/main/webapp/app/pages/newsPage/NewsPageContent.tsx b/src/main/webapp/app/pages/newsPage/NewsPageContent.tsx
@@ -34,6 +34,7 @@ import {
   AbstractLink,
   FdaApprovalLink,
   FdaBreakthroughLink,
+  FdaWithdrawalLink,
   NccnLink,
 } from 'app/pages/newsPage/Links';
 import WithSeparator from 'react-with-separator';
@@ -76,8 +77,8 @@ export const CURRENT_DRUG = 'Current Drug';
 export const UPDATE = 'Update';
 export const CURRENT_LEVEL_OF_EVIDENCE = 'Current Level of Evidence';
 export const PREVIOUS_LEVEL_OF_EVIDENCE = 'Previous Level of Evidence';
-export const NEWLY_ADDED_DRUGS = 'Newly Added Drug(s)';
-export const DRUGS_ALREADY_IN_ONCOKB = 'Drug(s) Already in OncoKB™';
+export const DRUGS_ADDED_TO_ONCOKB = `Drug(s) added to ${ONCOKB_TM}`;
+export const DRUGS_CURRENTLY_IN_ONCOKB = `Drug(s) currently in ${ONCOKB_TM}`;
 export const PREVIOUS_BIOMARKER_ASSOCIATION = 'Previous Biomarker Association';
 export const CURRENT_BIOMARKER_ASSOCIATION = 'Current Biomarker Association';
 
@@ -127,8 +128,8 @@ export const CHANGED_ANNOTATION_ADDITIONAL_DRUG_SAME_LEVEL_COLUMNS = [
   { name: MUTATION },
   { name: CANCER_TYPE },
   { name: CURRENT_LEVEL_OF_EVIDENCE },
-  { name: DRUGS_ALREADY_IN_ONCOKB },
-  { name: NEWLY_ADDED_DRUGS },
+  { name: DRUGS_CURRENTLY_IN_ONCOKB },
+  { name: DRUGS_ADDED_TO_ONCOKB },
   { name: EVIDENCE },
 ];
 
@@ -138,8 +139,8 @@ export const CHANGED_ANNOTATION_ADDITIONAL_DRUG_DIFF_LEVEL_COLUMNS = [
   { name: CANCER_TYPE },
   { name: PREVIOUS_LEVEL_OF_EVIDENCE },
   { name: CURRENT_LEVEL_OF_EVIDENCE },
-  { name: DRUGS_ALREADY_IN_ONCOKB },
-  { name: NEWLY_ADDED_DRUGS },
+  { name: DRUGS_CURRENTLY_IN_ONCOKB },
+  { name: DRUGS_ADDED_TO_ONCOKB },
   { name: EVIDENCE },
 ];
 
@@ -199,6 +200,71 @@ const EVIDENCE_COLUMN_SEPARATOR = '; ';
 // https://stackoverflow.com/questions/41947168/is-it-possible-to-use-keyof-operator-on-literals-instead-of-interfaces
 
 export const NEWS_BY_DATE: { [date: string]: NewsData } = {
+  '10022023': {
+    changedAnnotations: [
+      {
+        columnHeaderType: AnnotationColumnHeaderType.LEVEL,
+        title: 'Updated therapeutic implications - Changed level of evidence',
+        content: [
+          [
+            'RET',
+            'Oncogenic Mutations',
+            'Medullary Thyroid Cancer (MTC)',
+            'Pralsetinib',
+            '1',
+            '3A',
+            <FdaWithdrawalLink linkText="Withdrawal of FDA approval for Pralsetinib for RET-mutant MTC" />,
+          ],
+          [
+            'ALK',
+            'Oncogenic Mutations',
+            'Non-Small Cell Lung Cancer',
+            'Lorlatinib',
+            '1',
+            'No level',
+            <Linkout link="https://www.accessdata.fda.gov/drugsatfda_docs/label/2021/210868s004lbl.pdf">
+              Adherence to FDA drug label and CDx for Lorlatinib
+            </Linkout>,
+          ],
+        ],
+      },
+      {
+        columnHeaderType: AnnotationColumnHeaderType.ADDITIONAL_SAME_LEVEL_DRUG,
+        content: [
+          [
+            'Other Biomarkers',
+            'MSI-H',
+            'Endometrial Cancer',
+            '1',
+            'Pembrolizumab (All Solid Tumors)',
+            'Dostarlimab + Carboplatin + Paclitaxel (Level 1, Endometrial Cancer)',
+            <WithSeparator separator={EVIDENCE_COLUMN_SEPARATOR}>
+              <FdaApprovalLink
+                approval={'Dostarlimab for MSI-H endometrial cancer'}
+                link={
+                  'https://www.fda.gov/drugs/drug-approvals-and-databases/fda-approves-quizartinib-newly-diagnosed-acute-myeloid-leukemia'
+                }
+              />
+              <PMIDLink pmids={'36972026'} />
+            </WithSeparator>,
+          ],
+        ],
+      },
+    ],
+    newlyAddedGenes: [
+      'ELF4',
+      'ELK4',
+      'ELL',
+      'ELN',
+      'ERC1',
+      'FOXN4',
+      'HIRA',
+      'ONECUT2',
+      'POU3F2',
+      'SF3B2',
+      'ZBTB7A',
+    ],
+  },
   '09012023': {
     newlyAddedGenes: [
       'ACVR1B',

diff --git a/src/main/webapp/content/images/oncokb_summary.png b/src/main/webapp/content/images/oncokb_summary.png
diff --git a/src/main/webapp/index.html b/src/main/webapp/index.html
@@ -15,15 +15,15 @@
     <meta name="twitter:site" content="@oncokb">
     <meta name="twitter:title" content="OncoKB™ - MSK's Precision Oncology Knowledge Base">
     <meta name="twitter:description" content="OncoKB™ is a precision oncology knowledge base developed at Memorial Sloan Kettering Cancer Center that contains biological and clinical information about genomic alterations in cancer.">
-    <meta name="twitter:image" content="https://www.oncokb.org/content/images/oncokb_summary.png?20230901">
+    <meta name="twitter:image" content="https://www.oncokb.org/content/images/oncokb_summary.png?20230929">
     <meta name="twitter:url" content="https://www.oncokb.org/">
 
     <meta property="og:site_name" content="OncoKB™">
     <meta property="og:type" content="website">
     <meta property="og:url" content="https://www.oncokb.org/">
     <meta property="og:title" content="OncoKB™ - MSK's Precision Oncology Knowledge Base">
     <meta property="og:description" content="OncoKB™ is a precision oncology knowledge base developed at Memorial Sloan Kettering Cancer Center that contains biological and clinical information about genomic alterations in cancer.">
-    <meta property="og:image" content="https://www.oncokb.org/content/images/oncokb_summary.png?20230901">
+    <meta property="og:image" content="https://www.oncokb.org/content/images/oncokb_summary.png?20230929">
 
     <link rel="mask-icon" href="content/images/favicon/safari-pinned-tab.svg" color="#0968c3">
     <!-- Preload the customized fonts, so the html knows how to pain the page  -->