Merge branch 'features/add-submission-ontology-metadata-endpoint'

controllers/submission_metadata_controller.rb

@@ -1,87 +1,16 @@
 class SubmissionMetadataController < ApplicationController
 
-  namespace "/submission_metadata" do
-
-    ##
-    # Display all metadata for submissions
-    get do
-      all_attr = []
-
-      LinkedData::Models::OntologySubmission.attributes(:all).each do |attr|
-
-        if LinkedData.settings.id_url_prefix.nil? || LinkedData.settings.id_url_prefix.empty?
-          id_url_prefix = "http://data.bioontology.org/"
-        else
-          id_url_prefix = LinkedData.settings.id_url_prefix
-        end
-
-        attr_settings = {}
-        attr_settings[:@id] = "#{id_url_prefix}submission_metadata/#{attr.to_s}"
-        attr_settings[:@type] = "#{id_url_prefix}metadata/SubmissionMetadata"
-        attr_settings[:attribute] = attr.to_s
-
-        # Get metadata namespace
-        if LinkedData::Models::OntologySubmission.attribute_settings(attr)[:namespace].nil?
-          attr_settings[:namespace] = nil
-        else
-          attr_settings[:namespace] = LinkedData::Models::OntologySubmission.attribute_settings(attr)[:namespace].to_s
-        end
-
-        # Get metadata label if one
-        if LinkedData::Models::OntologySubmission.attribute_settings(attr)[:label].nil?
-          attr_settings[:label] = nil
-        else
-          attr_settings[:label] = LinkedData::Models::OntologySubmission.attribute_settings(attr)[:label]
-        end
-
-        # Get if it is an extracted metadata
-        if LinkedData::Models::OntologySubmission.attribute_settings(attr)[:extractedMetadata]
-          attr_settings[:extracted] = true
-        else
-          attr_settings[:extracted] = false
-        end
-
-        # Get mappings of the metadata
-        if LinkedData::Models::OntologySubmission.attribute_settings(attr)[:metadataMappings].nil?
-          attr_settings[:metadataMappings] = nil
-        else
-          attr_settings[:metadataMappings] = LinkedData::Models::OntologySubmission.attribute_settings(attr)[:metadataMappings]
-        end
-
-        # Get enforced from the metadata
-        if LinkedData::Models::OntologySubmission.attribute_settings(attr)[:enforce].nil?
-          attr_settings[:enforce] = []
-        else
-          attr_settings[:enforce] = []
-          LinkedData::Models::OntologySubmission.attribute_settings(attr)[:enforce].each do |enforced|
-            attr_settings[:enforce] << enforced.to_s
-          end
-        end
-
-        # Get enforcedValues from the metadata
-        attr_settings[:enforcedValues] = LinkedData::Models::OntologySubmission.attribute_settings(attr)[:enforcedValues]
-
-        # Get display from the metadata
-        if LinkedData::Models::OntologySubmission.attribute_settings(attr)[:display].nil?
-          attr_settings[:display] = "no"
-        else
-          attr_settings[:display] = LinkedData::Models::OntologySubmission.attribute_settings(attr)[:display]
-        end
-
-        if !LinkedData::Models::OntologySubmission.attribute_settings(attr)[:helpText].nil?
-          attr_settings[:helpText] = LinkedData::Models::OntologySubmission.attribute_settings(attr)[:helpText]
-        end
-
-        attr_settings[:@context] =  {
-            "@vocab" => "#{id_url_prefix}metadata/"
-        }
-
-        all_attr << attr_settings
-      end
+  ##
+  # Display all metadata for submissions
+  get "/submission_metadata" do
+    reply klass_metadata(LinkedData::Models::OntologySubmission, "submission_metadata")
+  end
 
-      reply all_attr
-    end
 
+  ##
+  # Display all metadata for ontologies
+  get "/ontology_metadata" do
+    reply klass_metadata(LinkedData::Models::Ontology, "ontology_metadata")
   end
 
 end

helpers/metadata_helper.rb

@@ -0,0 +1,89 @@
+require 'sinatra/base'
+require 'date'
+
+module Sinatra
+  module Helpers
+    module MetadataHelper
+
+      def klass_metadata(klass, type)
+        all_attr = []
+        klass.attributes(:all).each do |attr|
+
+          if LinkedData.settings.id_url_prefix.nil? || LinkedData.settings.id_url_prefix.empty?
+            id_url_prefix = "http://data.bioontology.org/"
+          else
+            id_url_prefix = LinkedData.settings.id_url_prefix
+          end
+
+          attr_settings = {}
+          attr_settings[:@id] = "#{id_url_prefix}#{type}/#{attr.to_s}"
+          attr_settings[:@type] = "#{id_url_prefix}metadata/#{type.camelize}"
+          attr_settings[:attribute] = attr.to_s
+
+          # Get metadata namespace
+          if klass.attribute_settings(attr)[:namespace].nil?
+            attr_settings[:namespace] = nil
+          else
+            attr_settings[:namespace] = klass.attribute_settings(attr)[:namespace].to_s
+          end
+
+          # Get metadata label if one
+          if klass.attribute_settings(attr)[:label].nil?
+            attr_settings[:label] = nil
+          else
+            attr_settings[:label] = klass.attribute_settings(attr)[:label]
+          end
+
+          # Get if it is an extracted metadata
+          if klass.attribute_settings(attr)[:extractedMetadata]
+            attr_settings[:extracted] = true
+          else
+            attr_settings[:extracted] = false
+          end
+
+          # Get mappings of the metadata
+          if klass.attribute_settings(attr)[:metadataMappings].nil?
+            attr_settings[:metadataMappings] = nil
+          else
+            attr_settings[:metadataMappings] = klass.attribute_settings(attr)[:metadataMappings]
+          end
+
+          # Get enforced from the metadata
+          if klass.attribute_settings(attr)[:enforce].nil?
+            attr_settings[:enforce] = []
+          else
+            attr_settings[:enforce] = []
+            klass.attribute_settings(attr)[:enforce].each do |enforced|
+              next if enforced.is_a? Proc
+              attr_settings[:enforce] << enforced.to_s
+            end
+          end
+
+          # Get enforcedValues from the metadata
+          attr_settings[:enforcedValues] = klass.attribute_settings(attr)[:enforcedValues]
+
+          # Get display from the metadata
+          if klass.attribute_settings(attr)[:display].nil?
+            attr_settings[:display] = "no"
+          else
+            attr_settings[:display] = klass.attribute_settings(attr)[:display]
+          end
+
+          if !klass.attribute_settings(attr)[:helpText].nil?
+            attr_settings[:helpText] = klass.attribute_settings(attr)[:helpText]
+          end
+
+          attr_settings[:@context] =  {
+            "@vocab" => "#{id_url_prefix}metadata/"
+          }
+
+          all_attr << attr_settings
+        end
+        all_attr
+      end
+    end
+  end
+end
+
+helpers Sinatra::Helpers::MetadataHelper
+