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|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| classdef Models | ||
| enumeration | ||
| SANDS | ||
| chemicals | ||
| computation | ||
| controlledTerms | ||
| core | ||
| ephys | ||
| publications | ||
| specimenPrep | ||
| stimulation | ||
| end | ||
| end |
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| Original file line number | Diff line number | Diff line change |
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| classdef Types < openminds.abstract.TypesEnumeration | ||
| enumeration | ||
| None('None') | ||
| AtlasAnnotation("openminds.sands.atlas.AtlasAnnotation") | ||
| BrainAtlas("openminds.sands.atlas.BrainAtlas") | ||
| BrainAtlasVersion("openminds.sands.atlas.BrainAtlasVersion") | ||
| CommonCoordinateSpace("openminds.sands.atlas.CommonCoordinateSpace") | ||
| CommonCoordinateSpaceVersion("openminds.sands.atlas.CommonCoordinateSpaceVersion") | ||
| ParcellationEntity("openminds.sands.atlas.ParcellationEntity") | ||
| ParcellationEntityVersion("openminds.sands.atlas.ParcellationEntityVersion") | ||
| ParcellationTerminology("openminds.sands.atlas.ParcellationTerminology") | ||
| ParcellationTerminologyVersion("openminds.sands.atlas.ParcellationTerminologyVersion") | ||
| Circle("openminds.sands.mathematicalshapes.Circle") | ||
| Ellipse("openminds.sands.mathematicalshapes.Ellipse") | ||
| Rectangle("openminds.sands.mathematicalshapes.Rectangle") | ||
| AnatomicalTargetPosition("openminds.sands.miscellaneous.AnatomicalTargetPosition") | ||
| CoordinatePoint("openminds.sands.miscellaneous.CoordinatePoint") | ||
| QualitativeRelationAssessment("openminds.sands.miscellaneous.QualitativeRelationAssessment") | ||
| QuantitativeRelationAssessment("openminds.sands.miscellaneous.QuantitativeRelationAssessment") | ||
| SingleColor("openminds.sands.miscellaneous.SingleColor") | ||
| ViewerSpecification("openminds.sands.miscellaneous.ViewerSpecification") | ||
| CustomAnatomicalEntity("openminds.sands.nonatlas.CustomAnatomicalEntity") | ||
| CustomAnnotation("openminds.sands.nonatlas.CustomAnnotation") | ||
| CustomCoordinateSpace("openminds.sands.nonatlas.CustomCoordinateSpace") | ||
| AmountOfChemical("openminds.chemicals.AmountOfChemical") | ||
| ChemicalMixture("openminds.chemicals.ChemicalMixture") | ||
| ChemicalSubstance("openminds.chemicals.ChemicalSubstance") | ||
| ProductSource("openminds.chemicals.ProductSource") | ||
| DataAnalysis("openminds.computation.DataAnalysis") | ||
| DataCopy("openminds.computation.DataCopy") | ||
| Environment("openminds.computation.Environment") | ||
| GenericComputation("openminds.computation.GenericComputation") | ||
| HardwareSystem("openminds.computation.HardwareSystem") | ||
| LaunchConfiguration("openminds.computation.LaunchConfiguration") | ||
| LocalFile("openminds.computation.LocalFile") | ||
| ModelValidation("openminds.computation.ModelValidation") | ||
| Optimization("openminds.computation.Optimization") | ||
| Simulation("openminds.computation.Simulation") | ||
| SoftwareAgent("openminds.computation.SoftwareAgent") | ||
| ValidationTest("openminds.computation.ValidationTest") | ||
| ValidationTestVersion("openminds.computation.ValidationTestVersion") | ||
| Visualization("openminds.computation.Visualization") | ||
| WorkflowExecution("openminds.computation.WorkflowExecution") | ||
| WorkflowRecipe("openminds.computation.WorkflowRecipe") | ||
| WorkflowRecipeVersion("openminds.computation.WorkflowRecipeVersion") | ||
| MRIPulseSequence("openminds.controlledterms.MRIPulseSequence") | ||
| MRIWeighting("openminds.controlledterms.MRIWeighting") | ||
| UBERONParcellation("openminds.controlledterms.UBERONParcellation") | ||
| ActionStatusType("openminds.controlledterms.ActionStatusType") | ||
| AgeCategory("openminds.controlledterms.AgeCategory") | ||
| AnalysisTechnique("openminds.controlledterms.AnalysisTechnique") | ||
| AnatomicalAxesOrientation("openminds.controlledterms.AnatomicalAxesOrientation") | ||
| AnatomicalIdentificationType("openminds.controlledterms.AnatomicalIdentificationType") | ||
| AnatomicalPlane("openminds.controlledterms.AnatomicalPlane") | ||
| AnnotationCriteriaType("openminds.controlledterms.AnnotationCriteriaType") | ||
| AnnotationType("openminds.controlledterms.AnnotationType") | ||
| AtlasType("openminds.controlledterms.AtlasType") | ||
| AuditoryStimulusType("openminds.controlledterms.AuditoryStimulusType") | ||
| BiologicalOrder("openminds.controlledterms.BiologicalOrder") | ||
| BiologicalProcess("openminds.controlledterms.BiologicalProcess") | ||
| BiologicalSex("openminds.controlledterms.BiologicalSex") | ||
| BreedingType("openminds.controlledterms.BreedingType") | ||
| CellCultureType("openminds.controlledterms.CellCultureType") | ||
| CellType("openminds.controlledterms.CellType") | ||
| ChemicalMixtureType("openminds.controlledterms.ChemicalMixtureType") | ||
| Colormap("openminds.controlledterms.Colormap") | ||
| ContributionType("openminds.controlledterms.ContributionType") | ||
| CranialWindowConstructionType("openminds.controlledterms.CranialWindowConstructionType") | ||
| CranialWindowReinforcementType("openminds.controlledterms.CranialWindowReinforcementType") | ||
| CriteriaQualityType("openminds.controlledterms.CriteriaQualityType") | ||
| DataType("openminds.controlledterms.DataType") | ||
| DeviceType("openminds.controlledterms.DeviceType") | ||
| DifferenceMeasure("openminds.controlledterms.DifferenceMeasure") | ||
| Disease("openminds.controlledterms.Disease") | ||
| DiseaseModel("openminds.controlledterms.DiseaseModel") | ||
| EducationalLevel("openminds.controlledterms.EducationalLevel") | ||
| ElectricalStimulusType("openminds.controlledterms.ElectricalStimulusType") | ||
| EthicsAssessment("openminds.controlledterms.EthicsAssessment") | ||
| ExperimentalApproach("openminds.controlledterms.ExperimentalApproach") | ||
| FileBundleGrouping("openminds.controlledterms.FileBundleGrouping") | ||
| FileRepositoryType("openminds.controlledterms.FileRepositoryType") | ||
| FileUsageRole("openminds.controlledterms.FileUsageRole") | ||
| GeneticStrainType("openminds.controlledterms.GeneticStrainType") | ||
| GustatoryStimulusType("openminds.controlledterms.GustatoryStimulusType") | ||
| Handedness("openminds.controlledterms.Handedness") | ||
| Language("openminds.controlledterms.Language") | ||
| Laterality("openminds.controlledterms.Laterality") | ||
| LearningResourceType("openminds.controlledterms.LearningResourceType") | ||
| MeasuredQuantity("openminds.controlledterms.MeasuredQuantity") | ||
| MeasuredSignalType("openminds.controlledterms.MeasuredSignalType") | ||
| MetaDataModelType("openminds.controlledterms.MetaDataModelType") | ||
| ModelAbstractionLevel("openminds.controlledterms.ModelAbstractionLevel") | ||
| ModelScope("openminds.controlledterms.ModelScope") | ||
| MolecularEntity("openminds.controlledterms.MolecularEntity") | ||
| OlfactoryStimulusType("openminds.controlledterms.OlfactoryStimulusType") | ||
| OperatingDevice("openminds.controlledterms.OperatingDevice") | ||
| OperatingSystem("openminds.controlledterms.OperatingSystem") | ||
| OpticalStimulusType("openminds.controlledterms.OpticalStimulusType") | ||
| Organ("openminds.controlledterms.Organ") | ||
| OrganismSubstance("openminds.controlledterms.OrganismSubstance") | ||
| OrganismSystem("openminds.controlledterms.OrganismSystem") | ||
| PatchClampVariation("openminds.controlledterms.PatchClampVariation") | ||
| PreparationType("openminds.controlledterms.PreparationType") | ||
| ProductAccessibility("openminds.controlledterms.ProductAccessibility") | ||
| ProgrammingLanguage("openminds.controlledterms.ProgrammingLanguage") | ||
| QualitativeOverlap("openminds.controlledterms.QualitativeOverlap") | ||
| SemanticDataType("openminds.controlledterms.SemanticDataType") | ||
| Service("openminds.controlledterms.Service") | ||
| SetupType("openminds.controlledterms.SetupType") | ||
| SoftwareApplicationCategory("openminds.controlledterms.SoftwareApplicationCategory") | ||
| SoftwareFeature("openminds.controlledterms.SoftwareFeature") | ||
| Species("openminds.controlledterms.Species") | ||
| StimulationApproach("openminds.controlledterms.StimulationApproach") | ||
| StimulationTechnique("openminds.controlledterms.StimulationTechnique") | ||
| SubcellularEntity("openminds.controlledterms.SubcellularEntity") | ||
| SubjectAttribute("openminds.controlledterms.SubjectAttribute") | ||
| TactileStimulusType("openminds.controlledterms.TactileStimulusType") | ||
| Technique("openminds.controlledterms.Technique") | ||
| TermSuggestion("openminds.controlledterms.TermSuggestion") | ||
| Terminology("openminds.controlledterms.Terminology") | ||
| TissueSampleAttribute("openminds.controlledterms.TissueSampleAttribute") | ||
| TissueSampleType("openminds.controlledterms.TissueSampleType") | ||
| TypeOfUncertainty("openminds.controlledterms.TypeOfUncertainty") | ||
| UnitOfMeasurement("openminds.controlledterms.UnitOfMeasurement") | ||
| VisualStimulusType("openminds.controlledterms.VisualStimulusType") | ||
| AccountInformation("openminds.core.actors.AccountInformation") | ||
| Affiliation("openminds.core.actors.Affiliation") | ||
| Consortium("openminds.core.actors.Consortium") | ||
| ContactInformation("openminds.core.actors.ContactInformation") | ||
| Contribution("openminds.core.actors.Contribution") | ||
| Organization("openminds.core.actors.Organization") | ||
| Person("openminds.core.actors.Person") | ||
| ContentType("openminds.core.data.ContentType") | ||
| ContentTypePattern("openminds.core.data.ContentTypePattern") | ||
| Copyright("openminds.core.data.Copyright") | ||
| File("openminds.core.data.File") | ||
| FileArchive("openminds.core.data.FileArchive") | ||
| FileBundle("openminds.core.data.FileBundle") | ||
| FilePathPattern("openminds.core.data.FilePathPattern") | ||
| FileRepository("openminds.core.data.FileRepository") | ||
| FileRepositoryStructure("openminds.core.data.FileRepositoryStructure") | ||
| Hash("openminds.core.data.Hash") | ||
| License("openminds.core.data.License") | ||
| Measurement("openminds.core.data.Measurement") | ||
| ServiceLink("openminds.core.data.ServiceLink") | ||
| DOI("openminds.core.digitalidentifier.DOI") | ||
| GRIDID("openminds.core.digitalidentifier.GRIDID") | ||
| HANDLE("openminds.core.digitalidentifier.HANDLE") | ||
| ISBN("openminds.core.digitalidentifier.ISBN") | ||
| ISSN("openminds.core.digitalidentifier.ISSN") | ||
| IdentifiersDotOrgID("openminds.core.digitalidentifier.IdentifiersDotOrgID") | ||
| ORCID("openminds.core.digitalidentifier.ORCID") | ||
| RORID("openminds.core.digitalidentifier.RORID") | ||
| RRID("openminds.core.digitalidentifier.RRID") | ||
| SWHID("openminds.core.digitalidentifier.SWHID") | ||
| StockNumber("openminds.core.digitalidentifier.StockNumber") | ||
| Comment("openminds.core.miscellaneous.Comment") | ||
| Funding("openminds.core.miscellaneous.Funding") | ||
| QuantitativeValue("openminds.core.miscellaneous.QuantitativeValue") | ||
| QuantitativeValueArray("openminds.core.miscellaneous.QuantitativeValueArray") | ||
| QuantitativeValueRange("openminds.core.miscellaneous.QuantitativeValueRange") | ||
| ResearchProductGroup("openminds.core.miscellaneous.ResearchProductGroup") | ||
| WebResource("openminds.core.miscellaneous.WebResource") | ||
| Dataset("openminds.core.products.Dataset") | ||
| DatasetVersion("openminds.core.products.DatasetVersion") | ||
| MetaDataModel("openminds.core.products.MetaDataModel") | ||
| MetaDataModelVersion("openminds.core.products.MetaDataModelVersion") | ||
| Model("openminds.core.products.Model") | ||
| ModelVersion("openminds.core.products.ModelVersion") | ||
| Project("openminds.core.products.Project") | ||
| Setup("openminds.core.products.Setup") | ||
| Software("openminds.core.products.Software") | ||
| SoftwareVersion("openminds.core.products.SoftwareVersion") | ||
| WebService("openminds.core.products.WebService") | ||
| WebServiceVersion("openminds.core.products.WebServiceVersion") | ||
| BehavioralProtocol("openminds.core.research.BehavioralProtocol") | ||
| Configuration("openminds.core.research.Configuration") | ||
| CustomPropertySet("openminds.core.research.CustomPropertySet") | ||
| NumericalProperty("openminds.core.research.NumericalProperty") | ||
| PropertyValueList("openminds.core.research.PropertyValueList") | ||
| Protocol("openminds.core.research.Protocol") | ||
| ProtocolExecution("openminds.core.research.ProtocolExecution") | ||
| Strain("openminds.core.research.Strain") | ||
| StringProperty("openminds.core.research.StringProperty") | ||
| Subject("openminds.core.research.Subject") | ||
| SubjectGroup("openminds.core.research.SubjectGroup") | ||
| SubjectGroupState("openminds.core.research.SubjectGroupState") | ||
| SubjectState("openminds.core.research.SubjectState") | ||
| TissueSample("openminds.core.research.TissueSample") | ||
| TissueSampleCollection("openminds.core.research.TissueSampleCollection") | ||
| TissueSampleCollectionState("openminds.core.research.TissueSampleCollectionState") | ||
| TissueSampleState("openminds.core.research.TissueSampleState") | ||
| CellPatching("openminds.ephys.activity.CellPatching") | ||
| ElectrodePlacement("openminds.ephys.activity.ElectrodePlacement") | ||
| RecordingActivity("openminds.ephys.activity.RecordingActivity") | ||
| Electrode("openminds.ephys.device.Electrode") | ||
| ElectrodeArray("openminds.ephys.device.ElectrodeArray") | ||
| ElectrodeArrayUsage("openminds.ephys.device.ElectrodeArrayUsage") | ||
| ElectrodeUsage("openminds.ephys.device.ElectrodeUsage") | ||
| Pipette("openminds.ephys.device.Pipette") | ||
| PipetteUsage("openminds.ephys.device.PipetteUsage") | ||
| Channel("openminds.ephys.entity.Channel") | ||
| Recording("openminds.ephys.entity.Recording") | ||
| Book("openminds.publications.Book") | ||
| Chapter("openminds.publications.Chapter") | ||
| LearningResource("openminds.publications.LearningResource") | ||
| LivePaper("openminds.publications.LivePaper") | ||
| LivePaperResourceItem("openminds.publications.LivePaperResourceItem") | ||
| LivePaperSection("openminds.publications.LivePaperSection") | ||
| LivePaperVersion("openminds.publications.LivePaperVersion") | ||
| Periodical("openminds.publications.Periodical") | ||
| PublicationIssue("openminds.publications.PublicationIssue") | ||
| PublicationVolume("openminds.publications.PublicationVolume") | ||
| ScholarlyArticle("openminds.publications.ScholarlyArticle") | ||
| CranialWindowPreparation("openminds.specimenprep.activity.CranialWindowPreparation") | ||
| TissueCulturePreparation("openminds.specimenprep.activity.TissueCulturePreparation") | ||
| TissueSampleSlicing("openminds.specimenprep.activity.TissueSampleSlicing") | ||
| SlicingDevice("openminds.specimenprep.device.SlicingDevice") | ||
| SlicingDeviceUsage("openminds.specimenprep.device.SlicingDeviceUsage") | ||
| StimulationActivity("openminds.stimulation.activity.StimulationActivity") | ||
| EphysStimulus("openminds.stimulation.stimulus.EphysStimulus") | ||
| end | ||
| end |
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code/mixedtypes/latest/+openminds/+internal/+mixedtype/+accountinformation/Service.m
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code/mixedtypes/latest/+openminds/+internal/+mixedtype/+affiliation/MemberOf.m
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,9 @@ | ||
| classdef MemberOf < openminds.internal.abstract.LinkedCategory | ||
| properties (Constant, Hidden) | ||
| ALLOWED_TYPES = ["openminds.core.Consortium", "openminds.core.Organization"] | ||
| ALLOWED_TYPES = [ ... | ||
| "openminds.core.actors.Consortium", ... | ||
| "openminds.core.actors.Organization" ... | ||
| ] | ||
| IS_SCALAR = true | ||
| end | ||
| end | ||
| end |
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code/mixedtypes/latest/+openminds/+internal/+mixedtype/+amountofchemical/Amount.m
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code/mixedtypes/latest/+openminds/+internal/+mixedtype/+amountofchemical/ChemicalProduct.m
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,10 @@ | ||
| classdef ChemicalProduct < openminds.internal.abstract.LinkedCategory | ||
| properties (Constant, Hidden) | ||
| ALLOWED_TYPES = ["openminds.chemicals.ChemicalMixture", "openminds.chemicals.ChemicalSubstance", "openminds.controlledterms.MolecularEntity"] | ||
| ALLOWED_TYPES = [ ... | ||
| "openminds.chemicals.ChemicalMixture", ... | ||
| "openminds.chemicals.ChemicalSubstance", ... | ||
| "openminds.controlledterms.MolecularEntity" ... | ||
| ] | ||
| IS_SCALAR = true | ||
| end | ||
| end | ||
| end |
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...types/latest/+openminds/+internal/+mixedtype/+anatomicaltargetposition/AnatomicalTarget.m
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|---|---|---|
| @@ -1,6 +1,15 @@ | ||
| classdef AnatomicalTarget < openminds.internal.abstract.LinkedCategory | ||
| properties (Constant, Hidden) | ||
| ALLOWED_TYPES = ["openminds.controlledterms.CellType", "openminds.controlledterms.Organ", "openminds.controlledterms.OrganismSubstance", "openminds.controlledterms.SubcellularEntity", "openminds.controlledterms.UBERONParcellation", "openminds.sands.CustomAnatomicalEntity", "openminds.sands.ParcellationEntity", "openminds.sands.ParcellationEntityVersion"] | ||
| ALLOWED_TYPES = [ ... | ||
| "openminds.controlledterms.CellType", ... | ||
| "openminds.controlledterms.Organ", ... | ||
| "openminds.controlledterms.OrganismSubstance", ... | ||
| "openminds.controlledterms.SubcellularEntity", ... | ||
| "openminds.controlledterms.UBERONParcellation", ... | ||
| "openminds.sands.atlas.ParcellationEntity", ... | ||
| "openminds.sands.atlas.ParcellationEntityVersion", ... | ||
| "openminds.sands.nonatlas.CustomAnatomicalEntity" ... | ||
| ] | ||
| IS_SCALAR = false | ||
| end | ||
| end | ||
| end |
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...dtypes/latest/+openminds/+internal/+mixedtype/+anatomicaltargetposition/SpatialLocation.m
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