Closes #1426: Run IIS experiments by relying on spark 3.4 version

WIP. Introducing required workflow.xml fixes for various workflows relying on spark3 to let their integration tests to succeed: * setting `spark.extraListeners` and `spark.sql.queryExecutionListeners` explicitly to empty values in order to avoid relying on incompatible, spark2 compliant, cloudera listeners * setting `spark.shuffle.useOldFetchProtocol=true` in order to address `2.4 to 3.0 migration guide` requirement regarding protocol for fetching shuffle blocks backward compatibility (and avoiding `IllegalArgumentException: Unexpected message type: <number>` kind of errors) The following modules were covered with workflow.xml related changes which resulted in successful integration tests execution: * `iis-wf-referenceextraction`
openaire · Oct 13, 2023 · 32d2ccc · 32d2ccc
1 parent 4beb79a
commit 32d2ccc
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Showing 8 changed files with 39 additions and 106 deletions.
diff --git a/...ain/resources/eu/dnetlib/iis/wf/referenceextraction/community/main/oozie_app/workflow.xml b/...ain/resources/eu/dnetlib/iis/wf/referenceextraction/community/main/oozie_app/workflow.xml
@@ -30,16 +30,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -74,8 +64,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>

diff --git a/...u/dnetlib/iis/wf/referenceextraction/concept/root_conceptid_report/oozie_app/workflow.xml b/...u/dnetlib/iis/wf/referenceextraction/concept/root_conceptid_report/oozie_app/workflow.xml
@@ -36,16 +36,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -77,8 +67,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>

diff --git a/.../main/resources/eu/dnetlib/iis/wf/referenceextraction/covid19/main/oozie_app/workflow.xml b/.../main/resources/eu/dnetlib/iis/wf/referenceextraction/covid19/main/oozie_app/workflow.xml
@@ -36,16 +36,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -102,8 +92,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
@@ -194,8 +185,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>

diff --git a/...c/main/resources/eu/dnetlib/iis/wf/referenceextraction/patent/main/oozie_app/workflow.xml b/...c/main/resources/eu/dnetlib/iis/wf/referenceextraction/patent/main/oozie_app/workflow.xml
@@ -38,16 +38,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -169,8 +159,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
@@ -234,8 +225,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
@@ -258,8 +250,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=1
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
@@ -301,8 +294,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>

diff --git a/...ources/eu/dnetlib/iis/wf/referenceextraction/project/funder_report/oozie_app/workflow.xml b/...ources/eu/dnetlib/iis/wf/referenceextraction/project/funder_report/oozie_app/workflow.xml
@@ -46,16 +46,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -86,8 +76,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>

diff --git a/.../resources/eu/dnetlib/iis/wf/referenceextraction/project/tara_main/oozie_app/workflow.xml b/.../resources/eu/dnetlib/iis/wf/referenceextraction/project/tara_main/oozie_app/workflow.xml
@@ -44,16 +44,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -88,8 +78,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                 --conf spark.sql.shuffle.partitions=${sparkSqlShufflePartitions}

diff --git a/...rces/eu/dnetlib/iis/wf/referenceextraction/researchinitiative/main/oozie_app/workflow.xml b/...rces/eu/dnetlib/iis/wf/referenceextraction/researchinitiative/main/oozie_app/workflow.xml
@@ -42,16 +42,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -86,8 +76,9 @@
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
                 --conf spark.yarn.executor.memoryOverhead=${sparkExecutorOverhead}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
@@ -116,8 +107,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>

diff --git a/...n/resources/eu/dnetlib/iis/wf/referenceextraction/softwareurl/main/oozie_app/workflow.xml b/...n/resources/eu/dnetlib/iis/wf/referenceextraction/softwareurl/main/oozie_app/workflow.xml
@@ -81,16 +81,6 @@
             <name>oozieActionShareLibForSpark2</name>
             <description>oozie action sharelib for spark 2.*</description>
         </property>
-        <property>
-            <name>spark2ExtraListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-            <description>spark 2.* extra listeners classname</description>
-        </property>
-        <property>
-            <name>spark2SqlQueryExecutionListeners</name>
-            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-            <description>spark 2.* sql query execution listeners classname</description>
-        </property>
         <property>
             <name>spark2YarnHistoryServerAddress</name>
             <description>spark 2.* yarn history server address</description>
@@ -212,8 +202,9 @@
                 --executor-memory=${sparkExecutorMemory}
                 --executor-cores=1
                 --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.extraListeners=
+                --conf spark.sql.queryExecutionListeners=
+                --conf spark.shuffle.useOldFetchProtocol=true
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>