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Merge pull request #2384 from opencb/TASK-5475-develop #833

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Merge pull request #2384 from opencb/TASK-5475-develop

Merge pull request #2384 from opencb/TASK-5475-develop #833

Triggered via push January 26, 2024 11:25
@juanfeSanahujajuanfeSanahuja
pushed 930d67f
develop
Status Failure
Total duration 2h 2m 52s
Artifacts 1

develop.yml

on: push
build  /  Build Java app
17m 50s
build / Build Java app
test  /  Execute Sonar Analysis
8m 22s
test / Execute Sonar Analysis
test  /  Execute JUnit and Jacoco tests
1h 44m
test / Execute JUnit and Jacoco tests
deploy-docker  /  Push Docker image
deploy-docker / Push Docker image
deploy-maven  /  Deploy to Maven and GitHub Packages
deploy-maven / Deploy to Maven and GitHub Packages
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151 errors and 3 warnings
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L79
Error computing pedigree graph for family family
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L50
Error computing pedigree graph for family family
VariantCatalogQueryUtilsTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantCatalogQueryUtilsTest.java#L138
Error computing pedigree graph for family f1
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithEmptyInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2521
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2719
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByProband: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2453
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePrimarySecondaryLockedInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2245
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomConsentTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1619
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createAndTestStatusIdIsNotNull: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L230
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationFindingsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1804
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteLockedClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2616
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1922
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1435
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.assignPermissions: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1344
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomPriorityTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1509
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testSearchAnnotation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3792
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisResponsible: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L381
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1466
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2057
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.sampleNotFoundInMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2907
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2556
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByInternalAnnotationSetTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3705
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalystsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L292
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkMoreThanOneSample: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2937
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByDisorderTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2640
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisReport: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L407
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearSecondaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1765
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.queryClinicalAnalysisByDate: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L570
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2504
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1487
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2755
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkFamilyMembersOrder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2682
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearPrimaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1726
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.revertInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1964
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateDisorder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2659
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1656
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePanelsInClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2774
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1674
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisRequest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L344
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomFlagTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1532
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2395
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testQueriesInFamilyCase: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2812
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createMultipleCasesSameFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L263
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByStatus: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2466
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalWithMissingSamplesInFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L635
Error computing pedigree graph for family family
FamilyManagerTest.updateDeleteInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1415
Error computing pedigree graph for family family1
FamilyManagerTest.updateInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1374
Error computing pedigree graph for family family1
FamilyManagerTest.recalculateRoles: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1241
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.createFamilyMissingMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1088
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.testRoles: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L594
Error computing pedigree graph for family Martinez-Martinez
test / Execute JUnit and Jacoco tests
There were 79 failed tests
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L79
Error computing pedigree graph for family family
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L50
Error computing pedigree graph for family family
VariantCatalogQueryUtilsTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantCatalogQueryUtilsTest.java#L138
Error computing pedigree graph for family f1
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithEmptyInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2521
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2719
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByProband: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2453
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePrimarySecondaryLockedInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2245
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomConsentTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1619
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createAndTestStatusIdIsNotNull: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L230
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationFindingsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1804
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteLockedClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2616
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1922
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1435
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.assignPermissions: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1344
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomPriorityTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1509
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testSearchAnnotation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3792
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisResponsible: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L381
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1466
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2057
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.sampleNotFoundInMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2907
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2556
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByInternalAnnotationSetTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3705
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalystsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L292
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkMoreThanOneSample: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2937
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByDisorderTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2640
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisReport: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L407
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearSecondaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1765
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.queryClinicalAnalysisByDate: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L570
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2504
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1487
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2755
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkFamilyMembersOrder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2682
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearPrimaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1726
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.revertInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1964
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateDisorder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2659
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1656
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePanelsInClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2774
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1674
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisRequest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L344
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomFlagTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1532
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2395
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testQueriesInFamilyCase: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2812
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createMultipleCasesSameFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L263
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByStatus: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2466
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalWithMissingSamplesInFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L635
Error computing pedigree graph for family family
FamilyManagerTest.updateDeleteInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1415
Error computing pedigree graph for family family1
FamilyManagerTest.updateInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1374
Error computing pedigree graph for family family1
FamilyManagerTest.recalculateRoles: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1241
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.createFamilyMissingMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1088
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.testRoles: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L594
Error computing pedigree graph for family Martinez-Martinez
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithEmptyInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2521
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2719
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByProband: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2453
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePrimarySecondaryLockedInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2245
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomConsentTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1619
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createAndTestStatusIdIsNotNull: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L230
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationFindingsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1804
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteLockedClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2616
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1922
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1435
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.assignPermissions: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1344
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomPriorityTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1509
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testSearchAnnotation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3792
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisResponsible: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L381
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1466
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2057
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.sampleNotFoundInMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2907
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2556
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByInternalAnnotationSetTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3705
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalystsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L292
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkMoreThanOneSample: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2937
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByDisorderTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2640
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisReport: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L407
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearSecondaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1765
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.queryClinicalAnalysisByDate: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L570
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2504
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1487
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2755
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkFamilyMembersOrder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2682
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearPrimaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1726
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.revertInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1964
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateDisorder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2659
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1656
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePanelsInClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2774
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1674
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisRequest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L344
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomFlagTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1532
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2395
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testQueriesInFamilyCase: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2812
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createMultipleCasesSameFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L263
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByStatus: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2466
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalWithMissingSamplesInFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L635
Error computing pedigree graph for family family
FamilyManagerTest.updateDeleteInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1415
Error computing pedigree graph for family family1
FamilyManagerTest.updateInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1374
Error computing pedigree graph for family family1
FamilyManagerTest.recalculateRoles: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1241
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.createFamilyMissingMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1088
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.testRoles: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L594
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.updateFamilyMissingMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1225
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.updateFamilyReferencesInIndividualTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L250
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.updateFamilyMembers: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1469
Could not update family family: Error computing/updating the pedigree graph for the family family
build / Build Java app
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test / Execute Sonar Analysis
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test / Execute JUnit and Jacoco tests
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3, scacap/action-surefire-report@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
build-folder Expired
804 MB