Prepare new development branch release-3.2.x #978
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Annotations
13 errors
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HadoopVariantDBAdaptorNativeTest.testGetAllVariants_genotypes_wrong_values[0]:
opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/adaptors/HadoopVariantDBAdaptorNativeTest.java#L43
Expected: an instance of org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException
but: <org.junit.internal.runners.model.MultipleFailureException: There were 2 errors:
org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException(Sample 'WRONG_SAMPLE' not found in study '1000g')
java.lang.AssertionError(expected:<0> but was:<1>)> is a org.junit.internal.runners.model.MultipleFailureException
Stacktrace was: org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException: Sample 'WRONG_SAMPLE' not found in study '1000g'
at org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException.sampleNotFound(VariantQueryException.java:203)
at org.opencb.opencga.storage.core.variant.query.VariantQueryParser.parseQuery(VariantQueryParser.java:211)
at org.opencb.opencga.storage.core.variant.query.VariantQueryParser.parseQuery(VariantQueryParser.java:153)
at org.opencb.opencga.storage.hadoop.variant.adaptors.VariantHadoopDBAdaptor.get(VariantHadoopDBAdaptor.java:253)
at org.opencb.opencga.storage.core.variant.adaptors.VariantDBAdaptorTest.query(VariantDBAdaptorTest.java:215)
at org.opencb.opencga.storage.hadoop.variant.adaptors.HadoopVariantDBAdaptorNativeTest.query(HadoopVariantDBAdaptorNativeTest.java:43)
at org.opencb.opencga.storage.core.variant.adaptors.VariantDBAdaptorTest.testGetAllVariants_genotypes_wrong_values(VariantDBAdaptorTest.java:1973)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.rules.RunRules.evaluate(RunRules.java:20)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeEager(JUnitCoreWrapper.java:95)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:75)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69)
at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146)
at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385)
at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162)
at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)
java.lang.AssertionError: expected:<0> but was:<1>
at org.junit.Assert.fail(Assert.java:89)
at org.junit.Assert.failNotEquals(Assert.java:835)
at org.junit.Assert.assertEquals(Assert.java:647)
at org.junit.Assert.assertEquals(Assert.java:633)
at org.opencb.opencga.storage.hadoop.variant.adaptors.HadoopVariantDBAdaptorTest.after(HadoopVariantDBAdaptorTest.java:128)
at sun.reflect.GeneratedMethodAccessor710.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.RunAfters.invokeMethod(RunAfters.java:46)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:33)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.rules.RunRules.evaluate(RunRules.java:20)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeEager(JUnitCoreWrapper.java:95)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:75)
at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69)
at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146)
at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385)
at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162)
at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)
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AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L377
Something wrong happened running a coverage: BigWig file (NonReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L422
Something wrong happened running a coverage: BigWig file (ReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L377
Something wrong happened running a coverage: BigWig file (NonReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L422
Something wrong happened running a coverage: BigWig file (ReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L377
Something wrong happened running a coverage: BigWig file (NonReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L422
Something wrong happened running a coverage: BigWig file (ReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L377
Something wrong happened running a coverage: BigWig file (NonReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L422
Something wrong happened running a coverage: BigWig file (ReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L377
Something wrong happened running a coverage: BigWig file (NonReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L422
Something wrong happened running a coverage: BigWig file (ReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L377
Something wrong happened running a coverage: BigWig file (NonReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]:
opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L422
Something wrong happened running a coverage: BigWig file (ReadOnlyCoverageIndex_HG00096.chrom20.small.bam.bw) was not create, please, check log files.
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Artifacts
Produced during runtime
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build-folder
Expired
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914 MB |
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