Merge pull request #2492 from opencb/TASK-6492

TASK-6492 Clinical Case query failed with cvCt value loss_of_function
opencb · Aug 5, 2024 · 7148b3f · 7148b3f
2 parents 00cc8a3 + 9333287
commit 7148b3f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...re/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java b/...re/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java
@@ -492,7 +492,7 @@ private String parseGenomicFilter(Query query) {
         // Consequence types (cts)
         String ctLogicalOperator = " OR ";
         if (StringUtils.isNotEmpty(query.getString(ANNOT_CONSEQUENCE_TYPE.key(), ""))) {
-            consequenceTypes = Arrays.asList(query.getString(ANNOT_CONSEQUENCE_TYPE.key()).split("[,;]"));
+            consequenceTypes = parseConsequenceTypes(Arrays.asList(query.getString(ANNOT_CONSEQUENCE_TYPE.key()).split("[,;]")));
             if (query.getString(ANNOT_CONSEQUENCE_TYPE.key()).contains(";")) {
                 ctLogicalOperator = " AND ";
                 // TODO This must be removed as soon as we have the Query procesing in use