storage-core: call the function parseConsequenceTypes from VariantQue…

…ryUtils to replace the aliases "loss_of_function" and "protein_altering" with their corresponding list of values, #TASK-6492
opencb · Jul 29, 2024 · 9a38f03 · 9a38f03
1 parent b87d9de
commit 9a38f03
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...re/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java b/...re/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java
@@ -492,7 +492,7 @@ private String parseGenomicFilter(Query query) {
         // Consequence types (cts)
         String ctLogicalOperator = " OR ";
         if (StringUtils.isNotEmpty(query.getString(ANNOT_CONSEQUENCE_TYPE.key(), ""))) {
-            consequenceTypes = Arrays.asList(query.getString(ANNOT_CONSEQUENCE_TYPE.key()).split("[,;]"));
+            consequenceTypes = parseConsequenceTypes(Arrays.asList(query.getString(ANNOT_CONSEQUENCE_TYPE.key()).split("[,;]")));
             if (query.getString(ANNOT_CONSEQUENCE_TYPE.key()).contains(";")) {
                 ctLogicalOperator = " AND ";
                 // TODO This must be removed as soon as we have the Query procesing in use