storage: Fix merge issue with ASSEMBLY. #TASK-6515

opencb · Aug 13, 2024 · d321044 · d321044
1 parent 00ddc0a
commit d321044
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/...re/src/test/java/org/opencb/opencga/storage/core/variant/VariantStorageEngineBNDTest.java b/...re/src/test/java/org/opencb/opencga/storage/core/variant/VariantStorageEngineBNDTest.java
@@ -48,6 +48,7 @@ public void before() throws Exception {
         variantStorageEngine.getConfiguration().getCellbase().setUrl(ParamConstants.CELLBASE_URL);
         variantStorageEngine.getConfiguration().getCellbase().setVersion(ParamConstants.CELLBASE_VERSION);
         variantStorageEngine.getConfiguration().getCellbase().setDataRelease(ParamConstants.CELLBASE_DATA_RELEASE_GRCH38);
+        variantStorageEngine.getOptions().put(VariantStorageOptions.ASSEMBLY.key(), "grch38");
 
         if (!loaded) {
             clearDB(DB_NAME);
@@ -60,7 +61,7 @@ protected void loadFiles() throws Exception {
         variantStorageEngine.getConfiguration().getCellbase().setUrl(ParamConstants.CELLBASE_URL);
         variantStorageEngine.getConfiguration().getCellbase().setVersion(ParamConstants.CELLBASE_VERSION);
         variantStorageEngine.getConfiguration().getCellbase().setDataRelease(ParamConstants.CELLBASE_DATA_RELEASE_GRCH38);
-
+        variantStorageEngine.getOptions().put(VariantStorageOptions.ASSEMBLY.key(), "grch38");
         studyMetadata = new StudyMetadata(1, "s1");
 //        variantStorageEngine.getOptions().append(VariantStorageOptions.ANNOTATOR_CELLBASE_EXCLUDE.key(), "expression,clinical");
         input1 = getResourceUri("variant-test-bnd.vcf");