server: rename authenticationOriginsAction, #TASK-5979

opencga-app/src/main/java/org/opencb/opencga/app/cli/main/executors/OrganizationsCommandExecutor.java

@@ -236,7 +236,7 @@ private RestResponse<OrganizationConfiguration> updateConfiguration() throws Exc
         queryParams.putIfNotEmpty("include", commandOptions.include);
         queryParams.putIfNotEmpty("exclude", commandOptions.exclude);
         queryParams.putIfNotNull("includeResult", commandOptions.includeResult);
-        queryParams.putIfNotNull("authenticationOrigins", commandOptions.authenticationOrigins);
+        queryParams.putIfNotNull("authenticationOriginsAction", commandOptions.authenticationOriginsAction);
 
 
         OrganizationConfiguration organizationConfiguration = null;

opencga-app/src/main/java/org/opencb/opencga/app/cli/main/options/OrganizationsCommandOptions.java

@@ -242,8 +242,8 @@ public class UpdateConfigurationCommandOptions {
         @Parameter(names = {"--include-result"}, description = "Flag indicating to include the created or updated document result in the response", required = false, help = true, arity = 0)
         public boolean includeResult = false; 
 
-        @Parameter(names = {"--authentication-origins"}, description = "Action to be performed if the array of authenticationOrigins is being updated.", required = false, arity = 1)
-        public String authenticationOrigins = "ADD"; 
+        @Parameter(names = {"--authentication-origins-action"}, description = "Action to be performed if the array of authenticationOrigins is being updated.", required = false, arity = 1)
+        public String authenticationOriginsAction = "ADD"; 
 
         @Parameter(names = {"--optimizations-simplify-permissions"}, description = "The body web service simplifyPermissions parameter", required = false, help = true, arity = 0)
         public boolean optimizationsSimplifyPermissions = false;

opencga-client/src/main/R/R/Organization-methods.R

@@ -24,7 +24,7 @@
 #' | searchNotes | /{apiVersion}/organizations/notes/search | include, exclude, creationDate, modificationDate, id, scope, visibility, uuid, userId, tags, version |
 #' | deleteNotes | /{apiVersion}/organizations/notes/{id}/delete | id[*], includeResult |
 #' | updateNotes | /{apiVersion}/organizations/notes/{id}/update | include, exclude, id[*], includeResult, body[*] |
-#' | updateConfiguration | /{apiVersion}/organizations/{organization}/configuration/update | include, exclude, organization[*], includeResult, authenticationOrigins, body[*] |
+#' | updateConfiguration | /{apiVersion}/organizations/{organization}/configuration/update | include, exclude, organization[*], includeResult, authenticationOriginsAction, body[*] |
 #' | info | /{apiVersion}/organizations/{organization}/info | include, exclude, organization[*] |
 #' | update | /{apiVersion}/organizations/{organization}/update | include, exclude, organization[*], includeResult, adminsAction, body[*] |
 #'
@@ -94,7 +94,7 @@ setMethod("organizationClient", "OpencgaR", function(OpencgaR, id, organization,
         #' @param exclude Fields excluded in the response, whole JSON path must be provided.
         #' @param organization Organization id.
         #' @param includeResult Flag indicating to include the created or updated document result in the response.
-        #' @param authenticationOrigins Action to be performed if the array of authenticationOrigins is being updated. Allowed values: ['ADD SET REMOVE REPLACE']
+        #' @param authenticationOriginsAction Action to be performed if the array of authenticationOrigins is being updated. Allowed values: ['ADD SET REMOVE REPLACE']
         #' @param data JSON containing the params to be updated.
         updateConfiguration=fetchOpenCGA(object=OpencgaR, category="organizations", categoryId=organization,
                 subcategory="configuration", subcategoryId=NULL, action="update", params=params, httpMethod="POST",

opencga-client/src/main/java/org/opencb/opencga/client/rest/clients/OrganizationClient.java

@@ -143,7 +143,7 @@ public RestResponse<Note> updateNotes(String id, NoteUpdateParams data, ObjectMa
      *       include: Fields included in the response, whole JSON path must be provided.
      *       exclude: Fields excluded in the response, whole JSON path must be provided.
      *       includeResult: Flag indicating to include the created or updated document result in the response.
-     *       authenticationOrigins: Action to be performed if the array of authenticationOrigins is being updated.
+     *       authenticationOriginsAction: Action to be performed if the array of authenticationOrigins is being updated.
      * @return a RestResponse object.
      * @throws ClientException ClientException if there is any server error.
      */

opencga-client/src/main/javascript/Organization.js

@@ -113,7 +113,7 @@ export default class Organization extends OpenCGAParentClass {
     * @param {String} [params.exclude] - Fields excluded in the response, whole JSON path must be provided.
     * @param {Boolean} [params.includeResult = "false"] - Flag indicating to include the created or updated document result in the response.
     *     The default value is false.
-    * @param {"ADD SET REMOVE REPLACE"} [params.authenticationOrigins = "ADD"] - Action to be performed if the array of
+    * @param {"ADD SET REMOVE REPLACE"} [params.authenticationOriginsAction = "ADD"] - Action to be performed if the array of
     *     authenticationOrigins is being updated. The default value is ADD.
     * @returns {Promise} Promise object in the form of RestResponse instance.
     */

opencga-client/src/main/python/pyopencga/rest_clients/organization_client.py

@@ -123,9 +123,9 @@ def update_configuration(self, organization, data=None, **options):
             must be provided.
         :param bool include_result: Flag indicating to include the created or
             updated document result in the response.
-        :param str authentication_origins: Action to be performed if the array
-            of authenticationOrigins is being updated. Allowed values: ['ADD
-            SET REMOVE REPLACE']
+        :param str authentication_origins_action: Action to be performed if
+            the array of authenticationOrigins is being updated. Allowed
+            values: ['ADD SET REMOVE REPLACE']
         """
 
         return self._post(category='organizations', resource='update', query_id=organization, subcategory='configuration', data=data, **options)

opencga-server/src/main/java/org/opencb/opencga/server/rest/OrganizationWSServer.java

@@ -109,7 +109,7 @@ public Response updateConfiguration(
             @ApiParam(value = ParamConstants.ORGANIZATION_DESCRIPTION, required = true) @PathParam(ParamConstants.ORGANIZATION) String organizationId,
             @ApiParam(value = ParamConstants.INCLUDE_RESULT_DESCRIPTION, defaultValue = "false") @QueryParam(ParamConstants.INCLUDE_RESULT_PARAM) boolean includeResult,
             @ApiParam(value = "Action to be performed if the array of authenticationOrigins is being updated.",
-                    allowableValues = "ADD,REMOVE,SET,REPLACE", defaultValue = "ADD") @QueryParam("authenticationOrigins") ParamUtils.UpdateAction authOriginsAction,
+                    allowableValues = "ADD,REMOVE,SET,REPLACE", defaultValue = "ADD") @QueryParam("authenticationOriginsAction") ParamUtils.UpdateAction authOriginsAction,
             @ApiParam(value = "JSON containing the params to be updated.", required = true) OrganizationConfiguration parameters) {
         try {
             if (authOriginsAction == null) {