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TASK-4875 - Port Patch 2.8.4 -> 2.11.0 (XB 1.6.4 -> 1.9.0) #2334

Merged
merged 34 commits into from
Sep 5, 2023
Merged

TASK-4875 - Port Patch 2.8.4 -> 2.11.0 (XB 1.6.4 -> 1.9.0) #2334

merged 34 commits into from
Sep 5, 2023

Commits on May 22, 2023

  1. cicd: New check-junit-test workflow #TASK-4445

    @juanfeSanahuja
    juanfeSanahuja committed May 22, 2023
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  2. cicd: Rename check-junit-test #TASK-4445

    @juanfeSanahuja
    juanfeSanahuja committed May 22, 2023
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Commits on May 24, 2023

  1. storage: Fix HadoopVariantStatisticsManagerTest::testJulieTool #TASK-… 

    …4445
    @j-coll
    j-coll committed May 24, 2023
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Commits on May 25, 2023

  1. cicd:Synch with the latest version of workflow from develop

    @juanfeSanahuja
    juanfeSanahuja committed May 25, 2023
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Commits on Jun 1, 2023

  1. Merge branch 'release-2.8.x' into TASK-4445

    @juanfeSanahuja
    juanfeSanahuja committed Jun 1, 2023
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Commits on Jun 8, 2023

  1. Prepare next release 2.8.3-SNAPSHOT

    @juanfeSanahuja
    juanfeSanahuja committed Jun 8, 2023
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  2. pom: testing another surefire report version 3.1.0

    @juanfeSanahuja
    juanfeSanahuja committed Jun 8, 2023
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Commits on Jul 7, 2023

  1. Merge branch 'release-2.8.x' into TASK-4445

    @j-coll
    j-coll committed Jul 7, 2023
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  2. Merge branch 'TASK-4445' of github.com:opencb/opencga into TASK-4445

    @j-coll
    j-coll committed Jul 7, 2023
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Commits on Jul 12, 2023

  1. catalog: fix include in project search method, #TASK-4712

    @pfurio
    pfurio committed Jul 12, 2023
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Commits on Jul 20, 2023

  1. catalog: add new test including just the studies, #TASK-4712

    @pfurio
    pfurio committed Jul 20, 2023
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  2. Create branch Port Patch 1.6.3.1 -> 1.6.4

    @juanfeSanahuja
    juanfeSanahuja committed Jul 20, 2023
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  3. Port Patch 1.6.3.1 -> 1.6.4 #TASK-4802

    @juanfeSanahuja
    juanfeSanahuja committed Jul 20, 2023
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  4. Merge pull request #2315 from opencb/TASK-4802 

    TASK-4802 - Port Patch 1.6.3.1 -> 1.6.4
    @juanfeSanahuja
    juanfeSanahuja authored Jul 20, 2023
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Commits on Jul 21, 2023

  1. storage: Add FILTER to the SampleIndexOnlyVariantQueryExecutor #TASK-… 

    …4794
    @j-coll
    j-coll committed Jul 21, 2023
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  2. Merge branch 'release-2.8.x' into TASK-4712

    @pfurio
    pfurio authored Jul 21, 2023
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  3. storage: Fix multi-allelic fetch. Add QUAL. #TASK-4794

    @j-coll
    j-coll committed Jul 21, 2023
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  4. Merge pull request #2312 from opencb/TASK-4712 

    TASK-4712 - Include not working in project search
    @pfurio
    pfurio authored Jul 21, 2023
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Commits on Jul 25, 2023

  1. storage: Do not return extra files information. #TASK-4794

    @j-coll
    j-coll committed Jul 25, 2023
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Commits on Jul 26, 2023

  1. storage: Fix NPE at SampleIndexOnlyVariantQueryExecutor for non multi… 

    …-file samples #TASK-4794
    @j-coll
    j-coll committed Jul 26, 2023
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  2. storage: Revert default SampleIndexConfiguration changes. #TASK-4794

    @j-coll
    j-coll committed Jul 26, 2023
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  3. storage: Fix variant parse for unusual contigs. #TASK-4816

    @j-coll
    j-coll committed Jul 26, 2023
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  4. storage: Fix test CategoricalIndexFieldTest#testEncodeDecodeFilter #T… 

    …ASK-4794
    @j-coll
    j-coll committed Jul 26, 2023
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  5. Merge pull request #2293 from opencb/TASK-4445 

    TASK-4445 - Opencga long test fails
    @j-coll
    j-coll authored Jul 26, 2023
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  6. storage: Fix tests from SampleIndexTest #TASK-4794

    @j-coll
    j-coll committed Jul 26, 2023
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Commits on Jul 28, 2023

  1. Merge pull request #2318 from opencb/TASK-4794 

    TASK-4794 - Missing "FILTER" field in VCF generated (export step) while running Exomiser
    @j-coll
    j-coll authored Jul 28, 2023
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Commits on Jul 31, 2023

  1. Merge branch 'release-2.8.x' into TASK-4816

    @juanfeSanahuja
    juanfeSanahuja authored Jul 31, 2023
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  2. Merge pull request #2317 from opencb/TASK-4816 

    TASK-4816 - Error fetching original call for INDELs export step from exomiser from complex contigs
    @juanfeSanahuja
    juanfeSanahuja authored Jul 31, 2023
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Commits on Aug 9, 2023

  1. catalog: fix project include issues, #TASK-4851

    @pfurio
    pfurio committed Aug 9, 2023
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Commits on Aug 10, 2023

  1. Merge pull request #2322 from opencb/TASK-4851 

    TASK-4851 - Some Catalog tests are failing - Project include issue
    @pfurio
    pfurio authored Aug 10, 2023
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Commits on Aug 11, 2023

  1. Prepare release 2.8.3

    @juanfeSanahuja
    juanfeSanahuja committed Aug 11, 2023
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Commits on Sep 4, 2023

  1. Prepare merge

    @juanfeSanahuja
    juanfeSanahuja committed Sep 4, 2023
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  2. Merge branch 'develop' into TASK-4875

    @juanfeSanahuja
    juanfeSanahuja committed Sep 4, 2023
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Commits on Sep 5, 2023

  1. Merge branch 'develop' into TASK-4875

    @juanfeSanahuja
    juanfeSanahuja authored Sep 5, 2023
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