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TASK-6005 - Error loading variants : "Row length 45522 is > 32767" #2449

Merged
merged 9 commits into from
May 17, 2024
Merged

TASK-6005 - Error loading variants : "Row length 45522 is > 32767" #2449

merged 9 commits into from
May 17, 2024

Commits on May 10, 2024

  1. storage: Hash large ref/alt alleles. Add new column ALLELES. #TASK-6005

    @j-coll
    j-coll committed May 10, 2024
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  2. app: Add migration to register new ALLELES column to phoenix. #TASK-6005

    @j-coll
    j-coll committed May 10, 2024
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Commits on May 14, 2024

  1. storage: Fix sampleData query with hashed alleles. #TASK-6005

    @j-coll
    j-coll committed May 14, 2024
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  2. storage: Add missing id to variants from sampleData query. #TASK-6005

    @j-coll
    j-coll committed May 14, 2024
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  3. storage: Ensure MR jobs read ALLELES column when needed. #TASK-6005

    @j-coll
    j-coll committed May 14, 2024
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  4. storage: Fix AIOOBE parsing short rowkey #TASK-6005

    @j-coll
    j-coll committed May 14, 2024
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  5. Merge branch 'release-2.12.x' into TASK-6005

    @j-coll
    j-coll authored May 14, 2024
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Commits on May 15, 2024

  1. storage: Fix last split parse at SampleIndexTableRecordReader #TASK-6005

    @j-coll
    j-coll committed May 15, 2024
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  2. storage: Fix return annotation from sample data. Fix test. #TASK-6005

    @j-coll
    j-coll committed May 15, 2024
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