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Job	Run time
list	58s
build (process_dataset, match_modalities, match_modalities/process_dataset, /home/runner/work/ope...	2m 6s
build (procrustes, match_modalities/methods, match_modalities/methods/procrustes, /home/runner/wo...	2m 41s
build (harmonic_alignment, match_modalities/methods, match_modalities/methods/harmonic_alignment,...	1m 40s
build (fastmnn, match_modalities/methods, match_modalities/methods/fastmnn, /home/runner/work/ope...	2m 1s
build (scot, match_modalities/methods, match_modalities/methods/scot, /home/runner/work/openprobl...	14m 31s
build (random_features, match_modalities/control_methods, match_modalities/control_methods/random...	1m 44s
build (true_features, match_modalities/control_methods, match_modalities/control_methods/true_fea...	1m 49s
build (mse, match_modalities/metrics, match_modalities/metrics/mse, /home/runner/work/openproblem...	3m 29s
build (knn_auc, match_modalities/metrics, match_modalities/metrics/knn_auc, /home/runner/work/ope...	1m 49s
build (dataset_simulator, spatial_decomposition, spatial_decomposition/dataset_simulator, /home/r...	1m 43s
build (process_dataset, spatial_decomposition, spatial_decomposition/process_dataset, /home/runne...	1m 39s
build (seurat, spatial_decomposition/methods, spatial_decomposition/methods/seurat, /home/runner/...	3m 7s
build (nnls, spatial_decomposition/methods, spatial_decomposition/methods/nnls, /home/runner/work...	2m 12s
build (cell2location, spatial_decomposition/methods, spatial_decomposition/methods/cell2location,...	9m 33s
build (vanillanmf, spatial_decomposition/methods, spatial_decomposition/methods/vanillanmf, /home...	2m 36s
build (nmfreg, spatial_decomposition/methods, spatial_decomposition/methods/nmfreg, /home/runner/...	1m 52s
build (stereoscope, spatial_decomposition/methods, spatial_decomposition/methods/stereoscope, /ho...	12m 24s
build (rctd, spatial_decomposition/methods, spatial_decomposition/methods/rctd, /home/runner/work...	27m 50s
build (destvi, spatial_decomposition/methods, spatial_decomposition/methods/destvi, /home/runner/...	7m 34s
build (tangram, spatial_decomposition/methods, spatial_decomposition/methods/tangram, /home/runne...	9m 41s
build (random_proportions, spatial_decomposition/control_methods, spatial_decomposition/control_m...	2m 29s
build (true_proportions, spatial_decomposition/control_methods, spatial_decomposition/control_met...	3m 19s
build (r2, spatial_decomposition/metrics, spatial_decomposition/metrics/r2, /home/runner/work/ope...	3m 0s
build (process_dataset, batch_integration, batch_integration/process_dataset, /home/runner/work/o...	1m 48s
build (feature_to_embed, batch_integration/transformers, batch_integration/transformers/feature_t...	1m 31s
build (embed_to_graph, batch_integration/transformers, batch_integration/transformers/embed_to_gr...	1m 43s
build (combat, batch_integration/methods, batch_integration/methods/combat, /home/runner/work/ope...	3m 3s
build (scanorama_embed, batch_integration/methods, batch_integration/methods/scanorama_embed, /ho...	1m 53s
build (scalex_embed, batch_integration/methods, batch_integration/methods/scalex_embed, /home/run...	11m 33s
build (fastmnn_feature, batch_integration/methods, batch_integration/methods/fastmnn_feature, /ho...	3m 37s
build (mnn_correct, batch_integration/methods, batch_integration/methods/mnn_correct, /home/runne...	2m 5s
build (scanvi, batch_integration/methods, batch_integration/methods/scanvi, /home/runner/work/ope...	12m 4s
build (pyliger, batch_integration/methods, batch_integration/methods/pyliger, /home/runner/work/o...	2m 37s
build (liger, batch_integration/methods, batch_integration/methods/liger, /home/runner/work/openp...	3m 30s
build (fastmnn_embedding, batch_integration/methods, batch_integration/methods/fastmnn_embedding,...	3m 37s
build (scalex_feature, batch_integration/methods, batch_integration/methods/scalex_feature, /home...	10m 49s
build (bbknn, batch_integration/methods, batch_integration/methods/bbknn, /home/runner/work/openp...	1m 56s
build (scvi, batch_integration/methods, batch_integration/methods/scvi, /home/runner/work/openpro...	6m 40s
build (scanorama_feature, batch_integration/methods, batch_integration/methods/scanorama_feature,...	2m 18s
build (mnnpy, batch_integration/methods, batch_integration/methods/mnnpy, /home/runner/work/openp...	2m 48s
build (batch_feature, batch_integration/control_methods/random_integration, batch_integration/con...	3m 2s
build (global_feature, batch_integration/control_methods/random_integration, batch_integration/co...	2m 46s
build (celltype_feature, batch_integration/control_methods/random_integration, batch_integration/...	1m 46s
build (global_graph, batch_integration/control_methods/random_integration, batch_integration/cont...	1m 41s
build (batch_graph, batch_integration/control_methods/random_integration, batch_integration/contr...	1m 43s
build (global_embed, batch_integration/control_methods/random_integration, batch_integration/cont...	1m 40s
build (batch_embed, batch_integration/control_methods/random_integration, batch_integration/contr...	4m 1s
build (celltype_graph, batch_integration/control_methods/random_integration, batch_integration/co...	3m 21s
build (celltype_embed, batch_integration/control_methods/random_integration, batch_integration/co...	1m 37s
build (global_feature, batch_integration/control_methods/no_integration, batch_integration/contro...	3m 48s
build (global_graph, batch_integration/control_methods/no_integration, batch_integration/control_...	1m 47s
build (global_embed, batch_integration/control_methods/no_integration, batch_integration/control_...	2m 6s
build (batch_embed, batch_integration/control_methods/no_integration, batch_integration/control_m...	1m 44s
build (celltype_jitter_embed, batch_integration/control_methods/perfect_integration, batch_integr...	3m 0s
build (celltype_embed, batch_integration/control_methods/perfect_integration, batch_integration/c...	2m 46s
build (pcr, batch_integration/metrics, batch_integration/metrics/pcr, /home/runner/work/openprobl...	2m 21s
build (isolated_label_asw, batch_integration/metrics, batch_integration/metrics/isolated_label_as...	2m 20s
build (hvg_overlap, batch_integration/metrics, batch_integration/metrics/hvg_overlap, /home/runne...	1m 35s
build (asw_label, batch_integration/metrics, batch_integration/metrics/asw_label, /home/runner/wo...	1m 35s
build (isolated_label_f1, batch_integration/metrics, batch_integration/metrics/isolated_label_f1,...	2m 12s
build (asw_batch, batch_integration/metrics, batch_integration/metrics/asw_batch, /home/runner/wo...	2m 19s
build (kbet, batch_integration/metrics, batch_integration/metrics/kbet, /home/runner/work/openpro...	2m 12s
build (cell_cycle_conservation, batch_integration/metrics, batch_integration/metrics/cell_cycle_c...	2m 11s
build (clustering_overlap, batch_integration/metrics, batch_integration/metrics/clustering_overla...	1m 49s
build (graph_connectivity, batch_integration/metrics, batch_integration/metrics/graph_connectivit...	1m 40s
build (process_dataset, dimensionality_reduction, dimensionality_reduction/process_dataset, /home...	2m 13s
build (tsne, dimensionality_reduction/methods, dimensionality_reduction/methods/tsne, /home/runne...	1m 46s
build (densmap, dimensionality_reduction/methods, dimensionality_reduction/methods/densmap, /home...	1m 45s
build (ivis, dimensionality_reduction/methods, dimensionality_reduction/methods/ivis, /home/runne...	3m 5s
build (diffusion_map, dimensionality_reduction/methods, dimensionality_reduction/methods/diffusio...	3m 8s
build (pymde, dimensionality_reduction/methods, dimensionality_reduction/methods/pymde, /home/run...	7m 40s
build (neuralee, dimensionality_reduction/methods, dimensionality_reduction/methods/neuralee, /ho...	7m 23s
build (umap, dimensionality_reduction/methods, dimensionality_reduction/methods/umap, /home/runne...	2m 16s
build (phate, dimensionality_reduction/methods, dimensionality_reduction/methods/phate, /home/run...	2m 43s
build (simlr, dimensionality_reduction/methods, dimensionality_reduction/methods/simlr, /home/run...	2m 14s
build (lmds, dimensionality_reduction/methods, dimensionality_reduction/methods/lmds, /home/runne...	2m 9s
build (pca, dimensionality_reduction/methods, dimensionality_reduction/methods/pca, /home/runner/...	2m 47s
build (random_features, dimensionality_reduction/control_methods, dimensionality_reduction/contro...	2m 41s
build (true_features, dimensionality_reduction/control_methods, dimensionality_reduction/control_...	2m 50s
build (spectral_features, dimensionality_reduction/control_methods, dimensionality_reduction/cont...	1m 45s
build (trustworthiness, dimensionality_reduction/metrics, dimensionality_reduction/metrics/trustw...	2m 22s
build (clustering_performance, dimensionality_reduction/metrics, dimensionality_reduction/metrics...	1m 48s
build (coranking, dimensionality_reduction/metrics, dimensionality_reduction/metrics/coranking, /...	2m 10s
build (distance_correlation, dimensionality_reduction/metrics, dimensionality_reduction/metrics/d...	1m 52s
build (density_preservation, dimensionality_reduction/metrics, dimensionality_reduction/metrics/d...	1m 42s
build (process_dataset, predict_modality, predict_modality/process_dataset, /home/runner/work/ope...	1m 46s
build (lmds_irlba_rf, predict_modality/methods, predict_modality/methods/lmds_irlba_rf, /home/run...	2m 24s
build (novel_predict, predict_modality/methods, predict_modality/methods/novel_predict, /home/run...	4m 15s
build (novel_train, predict_modality/methods, predict_modality/methods/novel_train, /home/runner/...	4m 17s
build (knnr_r, predict_modality/methods, predict_modality/methods/knnr_r, /home/runner/work/openp...	2m 25s
build (simplemlp_predict, predict_modality/methods, predict_modality/methods/simplemlp_predict, /...	4m 31s
build (simplemlp_train, predict_modality/methods, predict_modality/methods/simplemlp_train, /home...	4m 18s
build (guanlab_dengkw_pm, predict_modality/methods, predict_modality/methods/guanlab_dengkw_pm, /...	3m 4s
build (knnr_py, predict_modality/methods, predict_modality/methods/knnr_py, /home/runner/work/ope...	1m 38s
build (lm, predict_modality/methods, predict_modality/methods/lm, /home/runner/work/openproblems/...	2m 8s
build (zeros, predict_modality/control_methods, predict_modality/control_methods/zeros, /home/run...	2m 12s
build (solution, predict_modality/control_methods, predict_modality/control_methods/solution, /ho...	1m 49s
build (random_predict, predict_modality/control_methods, predict_modality/control_methods/random_...	1m 36s
build (mean_per_gene, predict_modality/control_methods, predict_modality/control_methods/mean_per...	2m 43s
build (mse, predict_modality/metrics, predict_modality/metrics/mse, /home/runner/work/openproblem...	1m 37s
build (correlation, predict_modality/metrics, predict_modality/metrics/correlation, /home/runner/...	1m 42s
build (process_dataset, label_projection, label_projection/process_dataset, /home/runner/work/ope...	2m 5s
build (mlp, label_projection/methods, label_projection/methods/mlp, /home/runner/work/openproblem...	2m 5s
build (logistic_regression, label_projection/methods, label_projection/methods/logistic_regressio...	2m 33s
build (scanvi, label_projection/methods, label_projection/methods/scanvi, /home/runner/work/openp...	8m 57s
build (xgboost, label_projection/methods, label_projection/methods/xgboost, /home/runner/work/ope...	3m 35s
build (knn, label_projection/methods, label_projection/methods/knn, /home/runner/work/openproblem...	2m 55s
build (scanvi_scarches, label_projection/methods, label_projection/methods/scanvi_scarches, /home...	9m 39s
build (naive_bayes, label_projection/methods, label_projection/methods/naive_bayes, /home/runner/...	1m 36s
build (majority_vote, label_projection/control_methods, label_projection/control_methods/majority...	3m 14s
build (random_labels, label_projection/control_methods, label_projection/control_methods/random_l...	1m 41s
build (true_labels, label_projection/control_methods, label_projection/control_methods/true_label...	2m 40s
build (f1, label_projection/metrics, label_projection/metrics/f1, /home/runner/work/openproblems/...	3m 28s
build (accuracy, label_projection/metrics, label_projection/metrics/accuracy, /home/runner/work/o...	3m 34s
build (process_dataset, denoising, denoising/process_dataset, /home/runner/work/openproblems/open...	2m 11s
build (dca, denoising/methods, denoising/methods/dca, /home/runner/work/openproblems/openproblems...	6m 38s
build (knn_smoothing, denoising/methods, denoising/methods/knn_smoothing, /home/runner/work/openp...	3m 21s
build (magic, denoising/methods, denoising/methods/magic, /home/runner/work/openproblems/openprob...	1m 48s
build (alra, denoising/methods, denoising/methods/alra, /home/runner/work/openproblems/openproble...	3m 48s
build (no_denoising, denoising/control_methods, denoising/control_methods/no_denoising, /home/run...	2m 12s
build (perfect_denoising, denoising/control_methods, denoising/control_methods/perfect_denoising,...	2m 9s
build (mse, denoising/metrics, denoising/metrics/mse, /home/runner/work/openproblems/openproblems...	3m 2s
build (poisson, denoising/metrics, denoising/metrics/poisson, /home/runner/work/openproblems/open...	1m 53s
build (simulate_svg, spatially_variable_genes/process_dataset, spatially_variable_genes/process_d...	3m 11s
build (split_dataset, spatially_variable_genes/process_dataset, spatially_variable_genes/process_...	2m 25s
build (select_reference, spatially_variable_genes/process_dataset, spatially_variable_genes/proce...	3m 16s
build (spark_x, spatially_variable_genes/methods, spatially_variable_genes/methods/spark_x, /home...	2m 26s
build (spatialde2, spatially_variable_genes/methods, spatially_variable_genes/methods/spatialde2,...	4m 54s
build (spagcn, spatially_variable_genes/methods, spatially_variable_genes/methods/spagcn, /home/r...	13m 1s
build (spark, spatially_variable_genes/methods, spatially_variable_genes/methods/spark, /home/run...	2m 35s
build (somde, spatially_variable_genes/methods, spatially_variable_genes/methods/somde, /home/run...	3m 12s
build (spagft, spatially_variable_genes/methods, spatially_variable_genes/methods/spagft, /home/r...	3m 19s
build (moran_i, spatially_variable_genes/methods, spatially_variable_genes/methods/moran_i, /home...	3m 11s
build (sepal, spatially_variable_genes/methods, spatially_variable_genes/methods/sepal, /home/run...	2m 8s
build (spanve, spatially_variable_genes/methods, spatially_variable_genes/methods/spanve, /home/r...	1m 24s
build (boostgp, spatially_variable_genes/methods, spatially_variable_genes/methods/boostgp, /home...	1m 50s
build (nnsvg, spatially_variable_genes/methods, spatially_variable_genes/methods/nnsvg, /home/run...	3m 20s
build (spatialde, spatially_variable_genes/methods, spatially_variable_genes/methods/spatialde, /...	1m 46s
build (gpcounts, spatially_variable_genes/methods, spatially_variable_genes/methods/gpcounts, /ho...	9m 42s
build (scgco, spatially_variable_genes/methods, spatially_variable_genes/methods/scgco, /home/run...	2m 47s
build (random_ranking, spatially_variable_genes/control_methods, spatially_variable_genes/control...	1m 14s
build (true_ranking, spatially_variable_genes/control_methods, spatially_variable_genes/control_m...	2m 37s
build (correlation, spatially_variable_genes/metrics, spatially_variable_genes/metrics/correlatio...	1m 16s
build (sync_test_resources, common, common/sync_test_resources, /home/runner/work/openproblems/op...	53s
build (create_component, common, common/create_component, /home/runner/work/openproblems/openprob...	59s
build (check_yaml_schema, common, common/check_yaml_schema, /home/runner/work/openproblems/openpr...	1m 46s
build (check_dataset_schema, common, common/check_dataset_schema, /home/runner/work/openproblems/...	2m 48s
build (decompress_gzip, common, common/decompress_gzip, /home/runner/work/openproblems/openproble...	53s
build (extract_metadata, common, common/extract_metadata, /home/runner/work/openproblems/openprob...	1m 39s
build (create_task_readme, common, common/create_task_readme, /home/runner/work/openproblems/open...	2m 9s
build (get_results, common/process_task_results, common/process_task_results/get_results, /home/r...	2m 13s
build (get_method_info, common/process_task_results, common/process_task_results/get_method_info,...	3m 25s
build (generate_qc, common/process_task_results, common/process_task_results/generate_qc, /home/r...	3m 34s
build (get_dataset_info, common/process_task_results, common/process_task_results/get_dataset_inf...	1m 45s
build (get_metric_info, common/process_task_results, common/process_task_results/get_metric_info,...	2m 3s
build (yaml_to_json, common/process_task_results, common/process_task_results/yaml_to_json, /home...	1m 45s
build (get_task_info, common/process_task_results, common/process_task_results/get_task_info, /ho...	2m 1s
build (zenodo_spatial_slidetags, datasets/loaders, datasets/loaders/zenodo_spatial_slidetags, /ho...	2m 56s
build (openproblems_neurips2021_bmmc, datasets/loaders, datasets/loaders/openproblems_neurips2021...	1m 35s
build (cellxgene_census_from_source_h5ad, datasets/loaders, datasets/loaders/cellxgene_census_fro...	2m 24s
build (openproblems_v1_multimodal, datasets/loaders, datasets/loaders/openproblems_v1_multimodal,...	11m 51s
build (tenx_visium, datasets/loaders, datasets/loaders/tenx_visium, /home/runner/work/openproblem...	2m 39s
build (cellxgene_census, datasets/loaders, datasets/loaders/cellxgene_census, /home/runner/work/o...	4m 1s
build (zenodo_spatial, datasets/loaders, datasets/loaders/zenodo_spatial, /home/runner/work/openp...	1m 46s
build (openproblems_v1, datasets/loaders, datasets/loaders/openproblems_v1, /home/runner/work/ope...	11m 27s
build (openproblems_neurips2022_pbmc, datasets/loaders, datasets/loaders/openproblems_neurips2022...	2m 53s
build (atac_tfidf, datasets/normalization, datasets/normalization/atac_tfidf, /home/runner/work/o...	2m 39s
build (log_scran_pooling, datasets/normalization, datasets/normalization/log_scran_pooling, /home...	2m 2s
build (log_cp, datasets/normalization, datasets/normalization/log_cp, /home/runner/work/openprobl...	1m 35s
build (sqrt_cp, datasets/normalization, datasets/normalization/sqrt_cp, /home/runner/work/openpro...	1m 39s
build (l1_sqrt, datasets/normalization, datasets/normalization/l1_sqrt, /home/runner/work/openpro...	3m 13s
build (prot_clr, datasets/normalization, datasets/normalization/prot_clr, /home/runner/work/openp...	1m 43s
build (subsample, datasets/processors, datasets/processors/subsample, /home/runner/work/openprobl...	2m 12s
build (hvg, datasets/processors, datasets/processors/hvg, /home/runner/work/openproblems/openprob...	1m 35s
build (svd, datasets/processors, datasets/processors/svd, /home/runner/work/openproblems/openprob...	2m 12s
build (pca, datasets/processors, datasets/processors/pca, /home/runner/work/openproblems/openprob...	1m 40s
build (knn, datasets/processors, datasets/processors/knn, /home/runner/work/openproblems/openprob...	3m 16s
	9h 48m 54s

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