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openproblems-bio / openproblems Public

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Test

Update dataset loaders #21

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Update dataset loaders

Update dataset loaders #21

Summary
Jobs
- List components to test
  
  Test (openproblems_v1_multimodal, datasets/loaders/multimodal, src/datasets/loaders/multimodal/op...
  
  Test (openproblems_neurips2021_bmmc, datasets/loaders/multimodal, src/datasets/loaders/multimodal...
  
  Test (openproblems_neurips2022_pbmc, datasets/loaders/multimodal, src/datasets/loaders/multimodal...
  
  Test (tenx_visium, datasets/loaders/spatial, src/datasets/loaders/spatial/tenx_visium/config.vsh....
  
  Test (zenodo_slidetags, datasets/loaders/spatial, src/datasets/loaders/spatial/zenodo_slidetags/c...
  
  Test (zenodo, datasets/loaders/spatial, src/datasets/loaders/spatial/zenodo/config.vsh.yaml, src/...
  
  Test (openproblems_v1, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/openproblems_v1/c...
  
  Test (cellxgene_census_from_source_h5ad, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq...
  
  Test (cellxgene_census, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/cellxgene_census...
  
  Test (atac_tfidf, datasets/normalization, src/datasets/normalization/atac_tfidf/config.vsh.yaml, ...
  
  Test (prot_clr, datasets/normalization, src/datasets/normalization/prot_clr/config.vsh.yaml, src/...
  
  Test (log_cp, datasets/normalization, src/datasets/normalization/log_cp/config.vsh.yaml, src/data...
  
  Test (log_scran_pooling, datasets/normalization, src/datasets/normalization/log_scran_pooling/con...
  
  Test (sqrt_cp, datasets/normalization, src/datasets/normalization/sqrt_cp/config.vsh.yaml, src/da...
  
  Test (l1_sqrt, datasets/normalization, src/datasets/normalization/l1_sqrt/config.vsh.yaml, src/da...
  
  Test (subsample, datasets/processors, src/datasets/processors/subsample/config.vsh.yaml, src/data...
  
  Test (knn, datasets/processors, src/datasets/processors/knn/config.vsh.yaml, src/datasets/process...
  
  Test (pca, datasets/processors, src/datasets/processors/pca/config.vsh.yaml, src/datasets/process...
  
  Test (hvg, datasets/processors, src/datasets/processors/hvg/config.vsh.yaml, src/datasets/process...
  
  Test (svd, datasets/processors, src/datasets/processors/svd/config.vsh.yaml, src/datasets/process...
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- Usage
- Workflow file

Usage Workflow file

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Update dataset loaders #21

test / Test (atac_tfidf, datasets/normalization, src/datasets/normalization/atac_tfidf/config.vsh.yaml, ...

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