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fix refactoring issues #41

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fix refactoring issues

fix refactoring issues #41

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Job Run time
test / List components to test
49s
test / Test (openproblems_v1_multimodal, datasets/loaders/multimodal, src/datasets/loaders/multimodal/op...
12m 24s
test / Test (openproblems_neurips2021_bmmc, datasets/loaders/multimodal, src/datasets/loaders/multimodal...
3m 18s
test / Test (openproblems_neurips2022_pbmc, datasets/loaders/multimodal, src/datasets/loaders/multimodal...
1m 4s
test / Test (tenx_visium, datasets/loaders/spatial, src/datasets/loaders/spatial/tenx_visium/config.vsh....
2m 26s
test / Test (zenodo_slidetags, datasets/loaders/spatial, src/datasets/loaders/spatial/zenodo_slidetags/c...
3m 27s
test / Test (zenodo, datasets/loaders/spatial, src/datasets/loaders/spatial/zenodo/config.vsh.yaml, src/...
2m 33s
test / Test (openproblems_v1, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/openproblems_v1/c...
12m 6s
test / Test (cellxgene_census_from_source_h5ad, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq...
3m 6s
test / Test (cellxgene_census, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/cellxgene_census...
2m 9s
test / Test (atac_tfidf, datasets/normalization, src/datasets/normalization/atac_tfidf/config.vsh.yaml, ...
3m 44s
test / Test (prot_clr, datasets/normalization, src/datasets/normalization/prot_clr/config.vsh.yaml, src/...
1m 30s
test / Test (log_cp, datasets/normalization, src/datasets/normalization/log_cp/config.vsh.yaml, src/data...
1m 16s
test / Test (log_scran_pooling, datasets/normalization, src/datasets/normalization/log_scran_pooling/con...
3m 41s
test / Test (sqrt_cp, datasets/normalization, src/datasets/normalization/sqrt_cp/config.vsh.yaml, src/da...
2m 53s
test / Test (l1_sqrt, datasets/normalization, src/datasets/normalization/l1_sqrt/config.vsh.yaml, src/da...
1m 27s
test / Test (subsample, datasets/processors, src/datasets/processors/subsample/config.vsh.yaml, src/data...
1m 21s
test / Test (knn, datasets/processors, src/datasets/processors/knn/config.vsh.yaml, src/datasets/process...
1m 18s
test / Test (pca, datasets/processors, src/datasets/processors/pca/config.vsh.yaml, src/datasets/process...
2m 32s
test / Test (hvg, datasets/processors, src/datasets/processors/hvg/config.vsh.yaml, src/datasets/process...
1m 49s
test / Test (svd, datasets/processors, src/datasets/processors/svd/config.vsh.yaml, src/datasets/process...
1m 24s
test / Test (get_dataset_info, reporting, src/reporting/get_dataset_info/config.vsh.yaml, src/reporting/...
3m 11s
test / Test (get_results, reporting, src/reporting/get_results/config.vsh.yaml, src/reporting/get_result...
2m 55s
test / Test (get_task_info, reporting, src/reporting/get_task_info/config.vsh.yaml, src/reporting/get_ta...
1m 18s
test / Test (get_metric_info, reporting, src/reporting/get_metric_info/config.vsh.yaml, src/reporting/ge...
2m 14s
test / Test (generate_qc, reporting, src/reporting/generate_qc/config.vsh.yaml, src/reporting/generate_q...
2m 25s
test / Test (get_method_info, reporting, src/reporting/get_method_info/config.vsh.yaml, src/reporting/ge...
1m 16s
test / Test (create_component, project, src/project/create_component/config.vsh.yaml, src/project/create...
1m 19s
test / Test (fetch_run_work_dir, project, src/project/fetch_run_work_dir/config.vsh.yaml, src/project/fe...
1m 51s
test / Test (render_readme, project, src/project/render_readme/config.vsh.yaml, src/project/render_readm...
2m 6s
test / Test (sync_resources, project, src/project/sync_resources/config.vsh.yaml, src/project/sync_resou...
1m 16s
test / Test (upgrade_config, project, src/project/upgrade_config/config.vsh.yaml, src/project/upgrade_co...
2m 29s
test / Test (extract_uns_metadata, utils, src/utils/extract_uns_metadata/config.vsh.yaml, src/utils/extr...
2m 28s
test / Test (yaml_to_json, utils, src/utils/yaml_to_json/config.vsh.yaml, src/utils/yaml_to_json/, pytho...
2m 5s
test / Test (decompress_gzip, utils, src/utils/decompress_gzip/config.vsh.yaml, src/utils/decompress_gzi...
45s
test / Test (check_dataset_with_schema, validation, src/validation/check_dataset_with_schema/config.vsh....
1m 33s
test / Test (check_yaml_with_schema, validation, src/validation/check_yaml_with_schema/config.vsh.yaml, ...
1m 11s
1h 36m 39s