remove migration related components

openproblems-bio · Sep 5, 2024 · 166bc61 · 166bc61
1 parent 5e502a2
commit 166bc61
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Showing 17 changed files with 7 additions and 428 deletions.
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -5,6 +5,12 @@
     "src/common/schemas/task_info.yaml": "src/**/api/task_info.yaml",
     "src/common/schemas/task_method.yaml": "src/tasks/**/methods/**/config.vsh.yaml",
     "src/common/schemas/task_control_method.yaml": "src/tasks/**/control_methods/**/config.vsh.yaml",
-    "src/common/schemas/task_metric.yaml": "src/tasks/**/metrics/**/config.vsh.yaml"
+    "src/common/schemas/task_metric.yaml": "src/tasks/**/metrics/**/config.vsh.yaml",
+    "/home/rcannood/.viash/releases/0.8.0/schema.json": [
+      "*.vsh.yaml"
+    ],
+    "/home/rcannood/.viash/releases/0.8.6/schema.json": [
+      "*.vsh.yaml"
+    ]
   }
 }
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -8,7 +8,6 @@ Structure:
 * src/common: Common components used by all tasks.
 * src/datasets: Components for fetching and processing datasets.
 * src/tasks/*: Benchmarking tasks
-* src/migration: Components for migrating from v1 to v2.
 * src/wf_utils: Workflow utilities.
 
 Migrates tasks:

diff --git a/src/common/schemas/defs_common.yaml b/src/common/schemas/defs_common.yaml
@@ -117,26 +117,6 @@ definitions:
     format: uri
     pattern: "^https://"
     description: The url to the repository of the used software library.
-  MigrationV1:
-    type: object
-    required: [path, commit]
-    properties:
-      additionalProperties: false
-      path:
-        type: string
-        description: |
-          If this component was migrated from the OpenProblems v1 repository, this value 
-          represents the location of the Python file relative to the root of the repository.
-      commit:
-        type: string
-        description: |
-          If this component was migrated from the OpenProblems v1 repository, this value
-          is the Git commit SHA of the v1 repository corresponding to when this component
-          was last updated.
-      note:
-        type: string
-        description: |
-          An optional note on any changes made during the migration.
   MethodVariants:
     type: object
     description: Alternative parameter sets which should be evaluated in the benchmark.

diff --git a/src/common/schemas/task_control_method.yaml b/src/common/schemas/task_control_method.yaml
@@ -41,8 +41,6 @@ properties:
             "$ref": "defs_common.yaml#/definitions/DocumentationURL"
           repository_url:
             "$ref": "defs_common.yaml#/definitions/RepositoryURL"
-          v1:
-            "$ref": "defs_common.yaml#/definitions/MigrationV1"
           variants:
             "$ref": "defs_common.yaml#/definitions/MethodVariants"
       arguments:

diff --git a/src/common/schemas/task_info.yaml b/src/common/schemas/task_info.yaml
@@ -16,8 +16,6 @@ properties:
     $ref: "defs_common.yaml#/definitions/Description"
   description: 
     $ref: "defs_common.yaml#/definitions/Description"
-  v1:
-    $ref: "defs_common.yaml#/definitions/MigrationV1"
   authors:
     type: array
     items:

diff --git a/src/common/schemas/task_method.yaml b/src/common/schemas/task_method.yaml
@@ -38,8 +38,6 @@ properties:
             "$ref": "defs_common.yaml#/definitions/DocumentationURL"
           repository_url:
             "$ref": "defs_common.yaml#/definitions/RepositoryURL"
-          v1:
-            "$ref": "defs_common.yaml#/definitions/MigrationV1"
           variants:
             "$ref": "defs_common.yaml#/definitions/MethodVariants"
       arguments:

diff --git a/src/common/schemas/task_metric.yaml b/src/common/schemas/task_metric.yaml
@@ -61,8 +61,6 @@ properties:
                 maximize:
                   type: boolean
                   description: Whether a higher metric value is better.
-                v1:
-                  "$ref": "defs_common.yaml#/definitions/MigrationV1"
       arguments:
         type: array
         description: Component-specific parameters.

diff --git a/src/migration/check_migration.sh b/src/migration/check_migration.sh
diff --git a/src/migration/check_migration_status/config.vsh.yaml b/src/migration/check_migration_status/config.vsh.yaml
diff --git a/src/migration/check_migration_status/script.py b/src/migration/check_migration_status/script.py
diff --git a/src/migration/check_migration_status/test.py b/src/migration/check_migration_status/test.py
diff --git a/src/migration/list_git_shas/config.vsh.yaml b/src/migration/list_git_shas/config.vsh.yaml
diff --git a/src/migration/list_git_shas/script.py b/src/migration/list_git_shas/script.py
diff --git a/src/migration/list_git_shas/test.py b/src/migration/list_git_shas/test.py
diff --git a/src/migration/update_bibtex/config.vsh.yaml b/src/migration/update_bibtex/config.vsh.yaml