move tasks to separate repositories (#910)

* move tasks to separate repositories * disable broken components for now [ci force] * use numpy<2 in tfidf
openproblems-bio · Oct 11, 2024 · 559f977 · 559f977
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diff --git a/CHANGELOG.md b/CHANGELOG.md
diff --git a/src/common/create_component/config.vsh.yaml b/src/common/create_component/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: create_component
+  status: disabled
   namespace: common
   description: |
     Create a component Viash component.

diff --git a/src/common/create_task_readme/config.vsh.yaml b/src/common/create_task_readme/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: create_task_readme
+  status: disabled
   namespace: common
   description: |
     Create a README for the task.

diff --git a/src/datasets/normalization/atac_tfidf/config.vsh.yaml b/src/datasets/normalization/atac_tfidf/config.vsh.yaml
@@ -17,6 +17,7 @@ platforms:
       - type: python
         packages:
           - muon
+          - numpy<2
   - type: nextflow
     directives: 
       label: [midtime, midmem, midcpu]
diff --git a/src/tasks/batch_integration/README.md b/src/tasks/batch_integration/README.md
diff --git a/src/tasks/batch_integration/api/comp_control_method_embedding.yaml b/src/tasks/batch_integration/api/comp_control_method_embedding.yaml
diff --git a/src/tasks/batch_integration/api/comp_control_method_feature.yaml b/src/tasks/batch_integration/api/comp_control_method_feature.yaml
diff --git a/src/tasks/batch_integration/api/comp_control_method_graph.yaml b/src/tasks/batch_integration/api/comp_control_method_graph.yaml
diff --git a/src/tasks/batch_integration/api/comp_method_embedding.yaml b/src/tasks/batch_integration/api/comp_method_embedding.yaml
diff --git a/src/tasks/batch_integration/api/comp_method_feature.yaml b/src/tasks/batch_integration/api/comp_method_feature.yaml
diff --git a/src/tasks/batch_integration/api/comp_method_graph.yaml b/src/tasks/batch_integration/api/comp_method_graph.yaml
diff --git a/src/tasks/batch_integration/api/comp_metric_embedding.yaml b/src/tasks/batch_integration/api/comp_metric_embedding.yaml
diff --git a/src/tasks/batch_integration/api/comp_metric_feature.yaml b/src/tasks/batch_integration/api/comp_metric_feature.yaml
diff --git a/src/tasks/batch_integration/api/comp_metric_graph.yaml b/src/tasks/batch_integration/api/comp_metric_graph.yaml
diff --git a/src/tasks/batch_integration/api/comp_process_dataset.yaml b/src/tasks/batch_integration/api/comp_process_dataset.yaml
diff --git a/src/tasks/batch_integration/api/comp_transformer_embedding_to_graph.yaml b/src/tasks/batch_integration/api/comp_transformer_embedding_to_graph.yaml
diff --git a/src/tasks/batch_integration/api/comp_transformer_feature_to_embedding.yaml b/src/tasks/batch_integration/api/comp_transformer_feature_to_embedding.yaml