flatten references

openproblems-bio · Nov 19, 2024 · a4c0d00 · a4c0d00
1 parent 797e681
commit a4c0d00
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Showing 2 changed files with 21 additions and 2 deletions.
diff --git a/src/reporting/get_method_info/script.R b/src/reporting/get_method_info/script.R
@@ -66,6 +66,15 @@ outputs <- map(configs, function(config) {
   )
   info$type_info <- NULL
 
+  # Flatten references
+  if (!is.null(info$reference) && info$reference != "") {
+    imap(info$reference, function(value, key) {
+      info[[paste0("reference_", key)]] <- value
+    })
+  }
+  info$reference <- NULL
+
+
   # ↑ this could be used as the new format
 
   # construct v1 format
@@ -76,7 +85,8 @@ outputs <- map(configs, function(config) {
     method_summary = info$summary,
     method_description = info$description,
     is_baseline = grepl("control", info$type),
-    paper_reference = info$reference %||% NA_character_,
+    reference_doi = info$reference_doi %||% NA_character_,
+    reference_bibtex = info$reference_bibtex %||% NA_character_,
     code_url = info$code_url %||% NA_character_,
     documentation_url = info$documentation_url %||% NA_character_,
     image = info$image %||% NA_character_,

diff --git a/src/reporting/get_metric_info/script.R b/src/reporting/get_metric_info/script.R
@@ -51,6 +51,14 @@ outputs <- map(configs, function(config) {
         info$comp_path
       )
 
+      # Flatten references
+      if (!is.null(info$reference) && info$reference != "") {
+        imap(info$reference, function(value, key) {
+          info[[paste0("reference_", key)]] <- value
+        })
+      }
+      info$reference <- NULL
+
       # ↑ this could be used as the new format
 
       # construct v1 format
@@ -60,7 +68,8 @@ outputs <- map(configs, function(config) {
         metric_name = info$label,
         metric_summary = info$summary,
         metric_description = info$description,
-        paper_reference = info$reference %||% NA_character_,
+        reference_doi = info$reference_doi %||% NA_character_,
+        reference_bibtex = info$reference_bibtex %||% NA_character_,
         implementation_url = info$implementation_url %||% NA_character_,
         image = info$image_url %||% NA_character_,
         code_version = info$code_version %||% NA_character_,