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Bump viash-io/viash-actions from 5 to 6 #897

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merged 2 commits into from
Sep 4, 2024
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Merged

Bump viash-io/viash-actions from 5 to 6 #897

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bff8f6b
Bump viash-io/viash-actions from 5 to 6
dependabot[bot] Sep 4, 2024
2123a57
Merge branch 'main' into dependabot/github_actions/viash-io/viash-act…
rcannood Sep 4, 2024
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12 changes: 6 additions & 6 deletions .github/workflows/main-build.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -15,14 +15,14 @@ jobs:
steps:
- uses: actions/checkout@v4

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

- name: Remove target folder from .gitignore
run: |
# allow publishing the target folder
sed -i 's#^/target/$##g' .gitignore

- uses: viash-io/viash-actions/ns-build@v5
- uses: viash-io/viash-actions/ns-build@v6
with:
config_mod: .functionality.version := 'main_build'
parallel: true
Expand All @@ -35,7 +35,7 @@ jobs:
publish_branch: main_build

- id: ns_list
uses: viash-io/viash-actions/ns-list@v5
uses: viash-io/viash-actions/ns-list@v6
with:
platform: docker
src: src
Expand Down Expand Up @@ -71,10 +71,10 @@ jobs:

- uses: actions/checkout@v4

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

- name: Build container
uses: viash-io/viash-actions/ns-build@v5
uses: viash-io/viash-actions/ns-build@v6
with:
config_mod: .functionality.version := 'main_build'
platform: docker
Expand All @@ -89,7 +89,7 @@ jobs:
password: ${{ secrets.GITHUB_TOKEN }}

- name: Push container
uses: viash-io/viash-actions/ns-build@v5
uses: viash-io/viash-actions/ns-build@v6
with:
config_mod: .functionality.version := 'main_build'
platform: docker
Expand Down
26 changes: 13 additions & 13 deletions .github/workflows/release-build.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -22,9 +22,9 @@ jobs:
steps:
- uses: actions/checkout@v4

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

- uses: viash-io/viash-actions/project/sync-and-cache-s3@v5
- uses: viash-io/viash-actions/project/sync-and-cache-s3@v6
id: cache
with:
s3_bucket: $s3_bucket
Expand All @@ -36,21 +36,21 @@ jobs:
# allow publishing the target folder
sed -i 's#^/target/$##g' .gitignore

- uses: viash-io/viash-actions/ns-build@v5
- uses: viash-io/viash-actions/ns-build@v6
with:
config_mod: ".functionality.version := '${{ github.event.inputs.version_tag }}'"
parallel: true

- name: Build nextflow schemas
uses: viash-io/viash-actions/pro/build-nextflow-schemas@v5
uses: viash-io/viash-actions/pro/build-nextflow-schemas@v6
with:
workflows: src
components: src
viash_pro_token: ${{ secrets.GTHB_PAT }}
tools_version: 'main_build'

- name: Build parameter files
uses: viash-io/viash-actions/pro/build-nextflow-params@v5
uses: viash-io/viash-actions/pro/build-nextflow-params@v6
with:
workflows: src
components: src
Expand All @@ -66,14 +66,14 @@ jobs:
full_commit_message: "Deploy for release ${{ github.event.inputs.version_tag }} from ${{ github.sha }}"

- id: ns_list_components
uses: viash-io/viash-actions/ns-list@v5
uses: viash-io/viash-actions/ns-list@v6
with:
platform: docker
src: src
format: json

- id: ns_list_workflows
uses: viash-io/viash-actions/ns-list@v5
uses: viash-io/viash-actions/ns-list@v6
with:
src: workflows
format: json
Expand Down Expand Up @@ -117,10 +117,10 @@ jobs:

- uses: actions/checkout@v4

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

- name: Build container
uses: viash-io/viash-actions/ns-build@v5
uses: viash-io/viash-actions/ns-build@v6
with:
config_mod: .functionality.version := 'main_build'
platform: docker
Expand All @@ -135,7 +135,7 @@ jobs:
password: ${{ secrets.GITHUB_TOKEN }}

- name: Push container
uses: viash-io/viash-actions/ns-build@v5
uses: viash-io/viash-actions/ns-build@v6
with:
config_mod: .functionality.version := '${{ github.event.inputs.version_tag }}'
platform: docker
Expand All @@ -161,14 +161,14 @@ jobs:

- uses: actions/checkout@v4

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

- uses: nf-core/[email protected]

# build target dir
# use containers from release branch, hopefully these are available
- name: Build target dir
uses: viash-io/viash-actions/ns-build@v5
uses: viash-io/viash-actions/ns-build@v6
with:
config_mod: ".functionality.version := '${{ github.event.inputs.version_tag }}'"
parallel: true
Expand Down Expand Up @@ -207,7 +207,7 @@ jobs:
steps:
- uses: actions/checkout@v4

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

# use cache
- name: Cache resources data
Expand Down
10 changes: 5 additions & 5 deletions .github/workflows/viash-test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -22,23 +22,23 @@ jobs:
with:
fetch-depth: 0

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

- uses: viash-io/viash-actions/project/sync-and-cache-s3@v5
- uses: viash-io/viash-actions/project/sync-and-cache-s3@v6
id: cache
with:
s3_bucket: $s3_bucket
dest_path: resources_test
cache_key_prefix: resources_test__

- id: ns_list
uses: viash-io/viash-actions/ns-list@v5
uses: viash-io/viash-actions/ns-list@v6
with:
platform: docker
format: json

- id: ns_list_filtered
uses: viash-io/viash-actions/project/detect-changed-components@v5
uses: viash-io/viash-actions/project/detect-changed-components@v6
with:
input_file: "${{ steps.ns_list.outputs.output_file }}"

Expand Down Expand Up @@ -68,7 +68,7 @@ jobs:

- uses: actions/checkout@v4

- uses: viash-io/viash-actions/setup@v5
- uses: viash-io/viash-actions/setup@v6

# use cache
- name: Cache resources data
Expand Down