update to viash 0.9 #911
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update to viash 0.9 #911
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* update to viash 0.9 and categorise datasets * group workflows * add api for spatial datasets * add more metadata * update publish dir path * update project config * update namespace * fix id * update example * fix example * update test resources * update helper resources * fix multiple separator --------- Co-authored-by: Robrecht Cannoodt <[email protected]>
* migrate components * remove resources which were moved to common_resources * remove more resources which were moved to common resources * update components * update scripts * wip migrate reporting components * rename components * update scripts * update components * more fixes * update * remove setup logging helper * fix components
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| - name: datasets/processors/pca | ||
| - name: datasets/processors/hvg | ||
| - name: datasets/processors/knn | ||
| - name: common/extract_metadata |
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| - name: common/extract_metadata | |
| - name: utils/extract_uns_metadata |
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| - name: datasets/normalization/sqrt_cp | ||
| - name: datasets/normalization/l1_sqrt | ||
| - name: datasets/processors/subsample | ||
| - name: common/extract_metadata |
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| - name: common/extract_metadata | |
| - name: utils/extract_uns_metadata |
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| - name: datasets/processors/pca | ||
| - name: datasets/processors/hvg | ||
| - name: datasets/processors/knn | ||
| - name: common/extract_metadata |
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| - name: common/extract_metadata | |
| - name: utils/extract_uns_metadata |
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| - name: datasets/normalization/sqrt_cp | ||
| - name: datasets/normalization/l1_sqrt | ||
| - name: datasets/processors/subsample | ||
| - name: common/extract_metadata |
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| - name: common/extract_metadata | |
| - name: utils/extract_uns_metadata |
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| - name: datasets/normalization/sqrt_cp | ||
| - name: datasets/normalization/l1_sqrt | ||
| - name: datasets/processors/subsample | ||
| - name: common/extract_metadata |
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| - name: common/extract_metadata | |
| - name: utils/extract_uns_metadata |
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src/datasets/workflows/multimodal/process_openproblems_v1_multimodal/config.vsh.yaml
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src/datasets/workflows/multimodal/process_openproblems_neurips2021_bmmc/config.vsh.yaml
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Nextflow run command needs to be updated.
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Tower launch command needs to be updated
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Nextflow run command needs to be updated.
Co-authored-by: Sai Nirmayi Yasa <[email protected]>
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