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update readme
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rcannood committed Aug 26, 2024
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18 changes: 16 additions & 2 deletions README.md
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Expand Up @@ -28,6 +28,19 @@ discovery. Any method that can predict a modality from another must have
accounted for these regulatory processes, but the demand for multi-modal
data shows that this is not trivial.

## Authors & contributors

| name | roles |
|:-------------------|:-------------------|
| Alejandro Granados | author |
| Alex Tong | author |
| Bastian Rieck | author |
| Daniel Burkhardt | author |
| Kai Waldrant | contributor |
| Kaiwen Deng | contributor |
| Louise Deconinck | author |
| Robrecht Cannoodt | author, maintainer |

## API

``` mermaid
Expand Down Expand Up @@ -348,8 +361,8 @@ Arguments:

| Name | Type | Description |
|:---|:---|:---|
| `--input_train_mod1` | `file` | The mod1 expression values of the train cells. |
| `--input_train_mod2` | `file` | The mod2 expression values of the train cells. |
| `--input_train_mod1` | `file` | (*Optional*) The mod1 expression values of the train cells. |
| `--input_train_mod2` | `file` | (*Optional*) The mod2 expression values of the train cells. |
| `--input_test_mod1` | `file` | The mod1 expression values of the test cells. |
| `--input_model` | `file` | A pretrained model for predicting the expression of one modality from another. |
| `--output` | `file` | (*Output*) A prediction of the mod2 expression values of the test cells. |
Expand Down Expand Up @@ -516,3 +529,4 @@ Data structure:
| `uns["gene_activity_var_names"]` | `string` | (*Optional*) Names of the gene activity matrix. |

</div>

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