fix defaults

openproblems-bio · Nov 6, 2024 · 48db076 · 48db076
1 parent c8176e5
commit 48db076
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/src/data_processors/dataset_simulator/config.vsh.yaml b/src/data_processors/dataset_simulator/config.vsh.yaml
@@ -32,8 +32,8 @@ argument_groups:
         default: 1.0
       - name: "--n_obs"
         type: integer
-        description: Number of spatial observations to generate. Default value is 100.
-        default: 100
+        description: Number of spatial observations to generate. Default value is 1000.
+        default: 1000
       - name: "--cell_lb"
         type: integer
         description: Lower bound for number of cells at each spot. Default value is 10.

diff --git a/src/data_processors/dataset_simulator/script.py b/src/data_processors/dataset_simulator/script.py
@@ -55,9 +55,9 @@ def generate_synthetic_dataset(
     cell_ub: int
         upper bound for number of cells at each spot. Default value is 30.
     umi_lb: int
-        lower bound for number of UMIs at each spot. Default value is 10.
+        lower bound for number of UMIs at each spot. Default value is 1000.
     umi_ub: int
-        upper bound for number of UMIs at each spot. Default value is 30.
+        upper bound for number of UMIs at each spot. Default value is 5000.
 
     Returns
     -------